Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01425 ATGTGGAATCCAAGGGACCAAGAAGATGACTCCTGGGAGGTCAGAGCCTTTGCAGAGGACACCAGCAACATCATGGGCACCACTTGGCCTCCGAGGTCCTACACCTGCACCTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTCGGTGGCCACATGAACGTTCACCGCCGCGACCGTGCTCGCCTCCACCAAGCCCCACCCATCAACAACAACAGCCACCACCACCACCACCACATCTCCTCTCTCTCCCACTCACACCACTCACCCTCTTTTCTCAACCTCTCTCACTCTCCGGAGCCTTTTGCAAATGGTGGGGTGTGCCTCTTGTACCCCTTTCGTAGCCCTAACACAGCTCCATTCTCCCCTCTTGGCCACACCACTAGTTTCAATAATGCATGTGTGGACTCTCCCTCCTCTCTTTTCTCTGTCTCCTCTTCCCTTTCACACCCTCCAATGAGGGTCCCAACTTGCTCAAATGCCTCCTTTGATTTCTCAGTGGCGCAGCCTGCCGTAGGGAGGAGGAACGTTTTCTCTTCTTTTTCTGAGAAAGTGGAACAAGAACCCGCAACCTCCTCCGCTCATCATGGCCACCACGAGGAGCTTGATCTAGAGCTCCGTTTGGGAAATAGATCAACATCAAGGTCATGA 651 0.5407 MWNPRDQEDDSWEVRAFAEDTSNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPPINNNSHHHHHHISSLSHSHHSPSFLNLSHSPEPFANGGVCLLYPFRSPNTAPFSPLGHTTSFNNACVDSPSSLFSVSSSLSHPPMRVPTCSNASFDFSVAQPAVGRRNVFSSFSEKVEQEPATSSAHHGHHEELDLELRLGNRSTSRS* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01425 216 MobiDBLite consensus disorder prediction 184 216 - -
Lapu3g01425 216 SUPERFAMILY beta-beta-alpha zinc fingers 31 61 IPR036236 -
Lapu3g01425 216 SMART c2h2final6 34 56 IPR013087 -
Lapu3g01425 216 Pfam C2H2-type zinc finger 34 58 - -
Lapu3g01425 216 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Lapu3g01425 216 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Lapu3g01425 216 PANTHER OS07G0101800 PROTEIN 6 211 - -
Lapu3g01425 216 MobiDBLite consensus disorder prediction 66 85 - -
Lapu3g01425 216 MobiDBLite consensus disorder prediction 189 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01425 Lapu-Chr3 16163291 16164076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01425 1 69 C2H2 Transcription Factor Family AT4G17810 68.831 2.14e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01425 - - pvu:PHAVU_003G230700g 352.058