Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01424 ATGGCTGGTTTGGATTTAGGAAGCGCTTCACGCTTTGTTCAAAACCTTCACAGACCGGACTTGCACTTGCAGCAGCTCCATCGCGATTCGGAGGACCAAGAGACGCCGCCGCCGAACCGTGGAACGGTGCCGTTCGACGACGATGACCGAAGCCAAGGATTGGACCTAGCTTCAGCGGGTCCCGGCGACGTGGTCGGTCGGCGTCCACGTGGCAGGCCACCGGGATCCAAGAACAAGCCGAAGCCGCCGGTGATAATCACGCGGGAGAGCGCCAACATTCTCCGCGCGCACATCCTCGAGGTCGGAAGCGGCTCCGATGTATTTGACTGCGTCACCACCTACGCACGCCGCCGCCAGCGCGGGATCTGCATCCTCAGCGGCAGCGGCACCGTCACCAATGTCAGCCTCCGCCAGCCCGCCGCTGCTGGCGCCGTCGTCACGCTCCACGGTCGCTTCGAGATTCTCTCCCTCTCTGGGTCCTTCCTCCCGCCGCCGGCTCCGCCTGGGGCCACCAGCCTCACTATCTACCTCGCCGGAGGGCAGGGGCAGGTCGTCGGAGGAAACGTGGTTGGAGAGCTGACTGCAGCGGGGCCGGTGATCGTCATCGCCGCGTCGTTCACGAACGTAGCCTACGAGAGGCTACCGTTGGAAGAAGAAGAACAGCTTCAGATTCAGCCACCTGCTACGACGTCGTCCCATGGCGTTGGAAATAACAACAGCAACAATAACAATAACAACTCTTTCCCTGACCCTTCTTCGGGACTTCCCTTCTTCAATTTACCTCTGAATATGCAGAACGTTCAGTTACCCGGGGAAGGTTGGGCGGGAAACGCTGCTTCACGTCCACCACCTTTTTGA 858 0.6061 MAGLDLGSASRFVQNLHRPDLHLQQLHRDSEDQETPPPNRGTVPFDDDDRSQGLDLASAGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANILRAHILEVGSGSDVFDCVTTYARRRQRGICILSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELTAAGPVIVIAASFTNVAYERLPLEEEEQLQIQPPATTSSHGVGNNNSNNNNNNSFPDPSSGLPFFNLPLNMQNVQLPGEGWAGNAASRPPPF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01424 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 260 IPR014476 GO:0003680
Lapu3g01424 285 MobiDBLite consensus disorder prediction 24 85 - -
Lapu3g01424 285 CDD DUF296 95 178 IPR005175 -
Lapu3g01424 285 Gene3D - 94 230 - -
Lapu3g01424 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 226 - -
Lapu3g01424 285 MobiDBLite consensus disorder prediction 223 254 - -
Lapu3g01424 285 MobiDBLite consensus disorder prediction 220 254 - -
Lapu3g01424 285 PIRSF ESCAROLA 7 284 IPR014476 GO:0003680
Lapu3g01424 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 208 IPR005175 -
Lapu3g01424 285 ProSiteProfiles PPC domain profile profile. 91 227 IPR005175 -
Lapu3g01424 285 FunFam AT-hook motif nuclear-localized protein 94 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01424 Lapu-Chr3 16092261 16093118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01424 1 283 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 68.197 3.67e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01424 - - pvu:PHAVU_003G230600g 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00454 2 3783133 3783942 Lapu3g01424 3 16092261 16093118 PCT