Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01422 ATGGACGCTCGCGAACCGCCCCGTCCACCGCCGTCGTCCATCATGGCGGGCCCCACCTCCTATGCTCCCACAAACATCGGACCTAATTCCTCCGGTGCCGTCATGATGGCACCCGCCACCGCGCGATTTCCCTTCGGCGTCGTGCCGCCGCCGCAACAACAGCCTCCGCCAGCGTCGGAGCCTTTCCCCGTCTCACCCGCAGCCGCCTACGACGGCTCCTCGTCGCCGATGAAGCCATGCTCCCTCGCCAAGAAGAAGCGCGGTCGTCCCCGGAAGTACTCGCCGGACGGTAACATTGCCCTCGGCCTCGCTCCCACCCATGCCTCCCCTCCTCCGCCTTCCTCCGCCGCCGCTTCCGGCGGCGGTATCGGTGGCGATTCGGCCGGCACTGCCTCCGCCGATGCTCCGGCGAAGAAGCACCGAGGAAGGCCTCCCGGGTCTGGGAAGAAGCAGCTGGATGCTCTCGGAGCTGGTGGGGTTGGATTCACTCCCCACGTGATCTTGGTGGAGTCTGGCGAGGACATAACGGCAAAAATTATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTCTCTGCTATTGGTGCAATCTGTAATGTTACCCTTCGACAACCTGCACTGTCTGGTGGTACTGCTACATATGAGGGCCGGTTTGAGATTATATCTTTATCAGGTGCTATGCAACAATCTGAAAGTAACGGTGAACGTAGCAGAACATGCACTTTGAATGTAACCCTTGCAGGGTCCGATGGACGTGTTTTGGGAGGCGGAGTTGCTGGAACGCTAACTGCAGCATCAACTGTACAGGTCATAGTGGGTAGCTTTATTGTGGATGGAAAAAGGTCGAGCTCGAATGCCCTCAAATCTGGGCCTTCTTCTGCAACACCCCTTCAAATGCTAACCTTTGGCGCACCCATGACTCCAACTAGTCCTACTTCTCAAGGGCCTTCAACTGAGTCCTCCGAGGAACATGACCACAGTCCTTTTTGTAGGGGGCCTGGTTCTGGGCCTGGACCTGGACTCTACAATAATACTAGTCAGCCCGTGCATAATATGCCCATGTATCATCATCCACTATGGGCTGGCCAAACTCATCAGTGA 1107 0.5736 MDAREPPRPPPSSIMAGPTSYAPTNIGPNSSGAVMMAPATARFPFGVVPPPQQQPPPASEPFPVSPAAAYDGSSSPMKPCSLAKKKRGRPRKYSPDGNIALGLAPTHASPPPPSSAAASGGGIGGDSAGTASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEDITAKIMAFSQQGPRTVCILSAIGAICNVTLRQPALSGGTATYEGRFEIISLSGAMQQSESNGERSRTCTLNVTLAGSDGRVLGGGVAGTLTAASTVQVIVGSFIVDGKRSSSNALKSGPSSATPLQMLTFGAPMTPTSPTSQGPSTESSEEHDHSPFCRGPGSGPGPGLYNNTSQPVHNMPMYHHPLWAGQTHQ* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01422 368 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Lapu3g01422 368 SMART AT_hook_2 138 150 IPR017956 GO:0003677
Lapu3g01422 368 MobiDBLite consensus disorder prediction 17 31 - -
Lapu3g01422 368 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 53 329 IPR039605 GO:0003680
Lapu3g01422 368 MobiDBLite consensus disorder prediction 284 368 - -
Lapu3g01422 368 MobiDBLite consensus disorder prediction 1 155 - -
Lapu3g01422 368 ProSiteProfiles PPC domain profile profile. 158 305 IPR005175 -
Lapu3g01422 368 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
Lapu3g01422 368 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 278 - -
Lapu3g01422 368 CDD DUF296 163 277 IPR005175 -
Lapu3g01422 368 MobiDBLite consensus disorder prediction 284 320 - -
Lapu3g01422 368 MobiDBLite consensus disorder prediction 1 16 - -
Lapu3g01422 368 Gene3D - 164 291 - -
Lapu3g01422 368 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01422 Lapu-Chr3 16042636 16047943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01422 9 368 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 44.153 4.34e-79 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01422 - - gmx:100789717 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00452 2 3767854 3772232 Lapu3g01422 3 16042636 16047943 PCT