Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01418 ATGCCAGTTCCACTTGCCCCCTACCCAGCACCACCAGCTCCTTATACACCACCAGCTAATGGTGCACAGAGCCAACTTGTCTGTACTGGGTGTAGAAACCTTCTCATGTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGCGGAGGTTGCCATACTCTCCTCATGTACATCCGTGGAGCGACAAATGTGCAATGTTCTTGTTGTCACACGGTCAACCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCAGTGCCACAACAAGCACCACTGAGCAGAAGTTCAACACTGTAACCATACAATAG 456 0.4956 MPVPLAPYPAPPAPYTPPANGAQSQLVCTGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATNVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASATTSTTEQKFNTVTIQ* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01418 151 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
Lapu3g01418 151 NCBIfam zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Lapu3g01418 151 NCBIfam zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Lapu3g01418 151 NCBIfam zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Lapu3g01418 151 Pfam LSD1 zinc finger 105 129 IPR005735 -
Lapu3g01418 151 Pfam LSD1 zinc finger 67 91 IPR005735 -
Lapu3g01418 151 Pfam LSD1 zinc finger 28 52 IPR005735 -
Lapu3g01418 151 PANTHER PROTEIN LSD1 16 55 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01418 Lapu-Chr3 16003755 16006055 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lapu3g01418 zf-LSD1 3.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01418 - - cit:102618163 261.536