Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01413 ATGGGAGGGGCAACACTGCCACCAGGATTTCGTTTCCATCCAACTGATGAGGAACTAGTGGGATACTACCTTAAAAGAAAAGTAGAGGGCCTTGAAATTGAGCTTGAAGTTATCCCTGTGATTGATTTTTACAAATTCGATCCCTGGGAGTTGCCGGAGAAGTCTTTCCTTCCAAAACGGGATATGGAATGGTTTTTCTTTTGTCCACGGGATCGTAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCTGGGTATTGGAAAGCCACTGGAAAAGACAGAAAGGTGGTGTGCCAGTCTAATCCATCCAATGTTACAGGGTACCGCAAGACCTTGGTTTTCTATGCTGGGAGGGCCCCTTTAGGAGATAGAACTGATTGGGTCATGCATGAGTATCGCCTCTGTGATGATCTTGGCCAAGCCACACCATCTTTTCAGGGTGGTTTTGCCTTGTGCCGGGTTATTAAGAAGAATGAGAAGGTAAGTGCTACACAGGGAGAAAACAAGGGCAAAAAGGCTGGAAGCAGTTCCATCAATGGGAGTGACACCTCAGTGAGATTGTCTGGTGAGCCATTCAGCAACTCTGGTGATGCTTCCTCTCATGCAAGCCACCTGAATAATGAGAGTCGTTATTCAAGCCCTATTACTTCTCCATACAATGTGGCTCCAATGGGAGAGATTAACCAAGCTTCTCTGGAAACCAATCCTTCAAACTTCTGGATCTCCCCTGACATGATTCTTGATTCTTCAAAGGACTACCCTCAATTACAACATGCTGTGGCTGAATATTTTCCACGGTATGACTTACCAAGTACGGGGACACATTGGCAATCATTGGAACATCCAGAAACTCCATCTAGTTTCTCCTACTCAAATTTCAATGGAGAAGTTGAATTTGCTGATACTCTCAGTCAAATTGGCGGCATGTCACCTTACTCAAGACAATGGAATTCCATGGACTTCTATGGAAATGGAGATGTCCCTTATGAAGATTACGATCAAATTAACTCAATCTCATATCCATAA 1032 0.4399 MGGATLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSNPSNVTGYRKTLVFYAGRAPLGDRTDWVMHEYRLCDDLGQATPSFQGGFALCRVIKKNEKVSATQGENKGKKAGSSSINGSDTSVRLSGEPFSNSGDASSHASHLNNESRYSSPITSPYNVAPMGEINQASLETNPSNFWISPDMILDSSKDYPQLQHAVAEYFPRYDLPSTGTHWQSLEHPETPSSFSYSNFNGEVEFADTLSQIGGMSPYSRQWNSMDFYGNGDVPYEDYDQINSISYP* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01413 343 MobiDBLite consensus disorder prediction 164 216 - -
Lapu3g01413 343 MobiDBLite consensus disorder prediction 170 216 - -
Lapu3g01413 343 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Lapu3g01413 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 214 - -
Lapu3g01413 343 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Lapu3g01413 343 FunFam Nac domain-containing protein 86 15 162 - -
Lapu3g01413 343 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Lapu3g01413 343 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01413 Lapu-Chr3 15932559 15934912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01413 1 300 NAC Transcription Factor Family AT4G17980 54.276 2.89e-110 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu3g01413 NAM 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01413 - - gmx:100792714 642.499