Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01404 ATGGTTTTCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTTGTTGAGGGAGACAACATTTCTGCTGCCGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCAATCTCTAGTAGGTCTGAAAGCTTCCACATTGCCATAGTAGAGGTGACTTCAACCAGTAGCCAGGGAGGTTTCAAATTTCTCGAGAATGTCAAGGATTTGCCAACTATTATGACTTCTAGCAACCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAGTGCTGGGACAAGTATCCTGTGTGAATCGCTTAAACCTGTCAAGGAATCTGTGGTGTCCATGTTGCAGTTCCAAACAGACAATGAACAACATGAAAGTAGAGTATCCATTAATATAGAGAAAGTATCCAGGTTTACTGATAATGATCATGAACTGTCTCCTGGAAATGATAAATACCCCGCTCCTTCAACTCCACAACTGAGGCATGGGACAAGATTGTTAGACGATGGTGATTGCCAAGAGCAGACTAATTGCTCAACAGAAAAGGAAAGTGGGGACCATGATGGAGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGAATGCTGAAACTGAAAGTACTCCTCAAGAAAGGAAATCTGAAATTACTTTGGCTGGGGAGGAAGTGAATTTAGATGACGCTGCCAAGGGTGAGAGTGTTGCTTCTCTAAATCCAAAAAAAAGAAAGGTTCCGGGCAACACTGATAAAAATACCAAATCTCCAAATAAAGTAGGTGTCCGTGGTGATTCATGTGAGATAAGACCAAGTCGAAAGAAGATGAAAGTAGACTGGACGCCCGAGCTGCACAAAAAATTTGTGAAGGCAGTTGAGCAACTAAGCATTGATCAAGCCATTCCTTCTAGAATATTAGAATTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTACAGAATGCACAAGAGACAAATCTTTCCCAAGGAAGAAGACCGGAAATGGTTGAATCAAAGAGAAAGGAGCTACTGTGTTCAAAGACCAATTATGGCCTTTCCTCCATTTCATTCTAATCACACCCTTCCCGTGGCTCCTGTATATCCTATGTGGGGACAATCCGGCAGTCAAACGGCTGGCATGCAGATTTGGAGCTCTCCTGGTTATCCCTTGTGGCAGCCTACTGCTGAAAATTGGTGCTGGAAACCATTTCCGGGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCAGTACCATCTCCTCAAGCTCCTTTTCCCTACTCTCAGAATATGCCTGCGTTGCTCAATGCTGATGCAGCAGATCACATGTTTACCATGCCACAAAGTTCCTTCGAGCATTATCCGGCAGAGGAGGTTGTCGACAAGGTGGTGAAAGAGGCAATAAACAAACCATGGCTACCCTTGCCTTTGGGCCTGAAACCCCCTTCCACAGATAGTGTGTTGGCTGAGCTATCAAGGCAAGGCATTTCCAGCATCCCTCCTAGGAGCAACAAGGGTTCAAATTCAGGCTGA 1677 0.4442 MVFTANDLQEWKDFPKGLKVLLVEGDNISAAEIRAKLEAMDYNVSTFCDENEALSAISSRSESFHIAIVEVTSTSSQGGFKFLENVKDLPTIMTSSNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFSAGTSILCESLKPVKESVVSMLQFQTDNEQHESRVSINIEKVSRFTDNDHELSPGNDKYPAPSTPQLRHGTRLLDDGDCQEQTNCSTEKESGDHDGESKSVETTCGNLNAETESTPQERKSEITLAGEEVNLDDAAKGESVASLNPKKRKVPGNTDKNTKSPNKVGVRGDSCEIRPSRKKMKVDWTPELHKKFVKAVEQLSIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQIFPKEEDRKWLNQRERSYCVQRPIMAFPPFHSNHTLPVAPVYPMWGQSGSQTAGMQIWSSPGYPLWQPTAENWCWKPFPGMHADAWGCPVLPVPSPQAPFPYSQNMPALLNADAADHMFTMPQSSFEHYPAEEVVDKVVKEAINKPWLPLPLGLKPPSTDSVLAELSRQGISSIPPRSNKGSNSG* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01404 558 FunFam Two-component response regulator-like APRR2 17 143 - -
Lapu3g01404 558 FunFam Two-component response regulator 312 374 - -
Lapu3g01404 558 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Lapu3g01404 558 MobiDBLite consensus disorder prediction 535 558 - -
Lapu3g01404 558 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 550 IPR044825 GO:0003700|GO:0045893
Lapu3g01404 558 MobiDBLite consensus disorder prediction 264 309 - -
Lapu3g01404 558 NCBIfam myb-like DNA-binding domain, SHAQKYF class 316 371 IPR006447 GO:0003677
Lapu3g01404 558 SUPERFAMILY Homeodomain-like 314 373 IPR009057 -
Lapu3g01404 558 SMART REC_2 18 128 IPR001789 GO:0000160
Lapu3g01404 558 MobiDBLite consensus disorder prediction 528 558 - -
Lapu3g01404 558 Gene3D - 313 374 - -
Lapu3g01404 558 SUPERFAMILY CheY-like 16 134 IPR011006 -
Lapu3g01404 558 MobiDBLite consensus disorder prediction 181 238 - -
Lapu3g01404 558 Pfam Myb-like DNA-binding domain 319 368 IPR001005 -
Lapu3g01404 558 Gene3D - 18 139 - -
Lapu3g01404 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 313 372 IPR017930 -
Lapu3g01404 558 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01404 Lapu-Chr3 15785786 15792617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01404 1 551 Response Regulator Gene Family AT4G18020 50.174 2.40e-141 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lapu3g01404 Response_reg 4e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01404 - - gmx:100777535 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00433 2 3625449 3632514 Lapu3g01404 3 15785786 15792617 PCT