Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01397 ATGGCTCTTTCTCTTTTGTGTCCTCTTCTTGCCACCTTTCTTTTCATGCAAACTCTGGCTGATACTTCCTTTGTTCAATCTCGAGCAGCATATTACCCAAACTCAGAAGAAAATGGCACAGACGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCCACCGTTAATGGTGGGGATGTATCAGCTGCATCTAATCTTTATCGAAATGGTGTTGGCTGTGGTGCCTGTTACCAGGTGAGATGCAGCAATAGTGCTTATTGCTCAGGAAACGGTGTCACAATAGTAATAACTGACCAAGGCTCAAGTGCTAACACTGACTTCATTCTTAGTCAACGAGCTTTTGGTGGGATGGCTATCAACAAGGATGCAGCTGCTTCTCTATTAGCTCTTGGCGTAGTTGATATTCAATATAGACGAGTTTCATGCAGCTACCCAAACAAAAACATTACAGTTAAGATACATGAGAGCAGCAACAACCCTCACTATTTGGCTTTTGTCTTATGGTTTCAACAAGGAAGTAGAGACATAACTGCTGTGCAACTTTGCGAGACTCAGAACTTTGTGTGCAAGTTACTGGACCGGAGTCATGGGGCAGTATGGACCACTACAGCGCCACCGAGTGGACCTTTGGCTTTGAGGATGTTGTTTAGTGCTGAAGAAGAGGGAGATGAATCATGGGTCGTTCCAGTTAATAACATTCCACAAGACTGGAAGGCTGGAGAAACGTACGACTTAGGGGTACAAGTGGACCAATAG 753 0.4462 MALSLLCPLLATFLFMQTLADTSFVQSRAAYYPNSEENGTDVGACGFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCSNSAYCSGNGVTIVITDQGSSANTDFILSQRAFGGMAINKDAAASLLALGVVDIQYRRVSCSYPNKNITVKIHESSNNPHYLAFVLWFQQGSRDITAVQLCETQNFVCKLLDRSHGAVWTTTAPPSGPLALRMLFSAEEEGDESWVVPVNNIPQDWKAGETYDLGVQVDQ* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01397 250 CDD DPBB_EXLB_N 25 141 - -
Lapu3g01397 250 Gene3D - 143 248 IPR036749 -
Lapu3g01397 250 SUPERFAMILY Barwin-like endoglucanases 12 145 IPR036908 -
Lapu3g01397 250 PANTHER EXPANSIN-B3 14 247 - -
Lapu3g01397 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 244 IPR007117 -
Lapu3g01397 250 Gene3D - 11 142 IPR036908 -
Lapu3g01397 250 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Lapu3g01397 250 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Lapu3g01397 250 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Lapu3g01397 250 Pfam Lytic transglycolase 62 136 IPR009009 -
Lapu3g01397 250 SUPERFAMILY PHL pollen allergen 146 243 IPR036749 -
Lapu3g01397 250 Pfam Expansin C-terminal domain 148 219 IPR007117 -
Lapu3g01397 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01397 Lapu-Chr3 15694432 15696488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01397 2 243 Expansin Gene Family AT4G17030 41.975 2.39e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01397 - - gmx:100812555 478.789