Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01391 ATGGCTGTTCAAGCTCAATATCCTTCCAATGTTCTCTTTCTAAACAGGACCAACGGCCAAGAAGTCCTTGAGTATTCATTGCAACATCAACAACAACAAGGAGGCCTTTTAAACCAACCCCATATGTTATACAACAACGACAATGGAAGTAACAACATCAACAACAACAACAACAATCGCAAGAGAGGCAGAGAGGACACCACTGTTGCCAACAACACAATCACCACAACTGCTTCTAATCTTATTAATCCCTTCTCTTTACAATCTCAGCCTCCACAACTTATTCATCTCTCTCAGTTACATAATCATCAACAAAATGTGGTCTCTACTGGTCTCCGCTTATCCTTCGATGACCAACAACCTCACCACCAACAACAAAGACCACAGCTTCATCAAAACCAATCTCAACCACTATTAGTACATGCCTCGTCTCACTCTTCTGCTTTCTCGTCTCTGTTATCCCAAGGCTTGGCTTCTCAAATCAAACAACAGCGCGATGAAATTGATCAATTTCTCCATGCCCAGGGAGAACAACTGCGGCGGACATTGGCAGAGAAGAGGCAGAAGCATTATAACGCGCTGCTGAGCGCGGCGGAGGAGGCGGTGGCGCGGCGGCTCAGAGAGAAGGAGGTGGAAGTGGAGAAGGCCACGCGCAAGAACGCAGAGCTAGAAGCACGGGCAGCCCAGCTGAGCGTTGAGGCGCAGGTGTGGCAGGCTAAGGCCCGGGCCCAGGAAGCAACGGCGGCCTCCCTTCAGGCCCAACTGCAGCACACCATAATGTGTCAGGGCGGTGAGGAAGCCGGCGGCGGCGGCGTGTCGTGCGCGGTGGAAGGGCAGGCTGAGGACGCGGAGTCTGCCCACATCGACCCAGAGCGCGTGGTGTTAGCCAGTGCGCGTCCAAAATGCAGAGGGTGCACGAAGCGCGTGGCCTCGATCGTGGTTTTGCCGTGTCGGCACTTGTGTATCTGTACAGAATGCGATGCGCATTTCCGAGTGTGCCCAGTTTGTCTCACACCAAAGAATTCAACCGTTGAAGTTTTTCTCTCTTAA 1050 0.5181 MAVQAQYPSNVLFLNRTNGQEVLEYSLQHQQQQGGLLNQPHMLYNNDNGSNNINNNNNNRKRGREDTTVANNTITTTASNLINPFSLQSQPPQLIHLSQLHNHQQNVVSTGLRLSFDDQQPHHQQQRPQLHQNQSQPLLVHASSHSSAFSSLLSQGLASQIKQQRDEIDQFLHAQGEQLRRTLAEKRQKHYNALLSAAEEAVARRLREKEVEVEKATRKNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQHTIMCQGGEEAGGGGVSCAVEGQAEDAESAHIDPERVVLASARPKCRGCTKRVASIVVLPCRHLCICTECDAHFRVCPVCLTPKNSTVEVFLS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01391 349 MobiDBLite consensus disorder prediction 118 137 - -
Lapu3g01391 349 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 282 348 - -
Lapu3g01391 349 ProSiteProfiles Zinc finger RING-type profile. 302 336 IPR001841 -
Lapu3g01391 349 Coils Coil 199 240 - -
Lapu3g01391 349 FunFam Baculoviral IAP repeat containing 7 311 347 - -
Lapu3g01391 349 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 46 346 IPR017066 -
Lapu3g01391 349 PIRSF SBP1_RNase_bind 1 349 IPR017066 -
Lapu3g01391 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 349 IPR013083 -
Lapu3g01391 349 Pfam Zinc finger, C3HC4 type (RING finger) 301 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01391 Lapu-Chr3 15568958 15572082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01391 301 346 C3H Transcription Factor Family AT3G06140 36.000 7.45e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01391 K19042 - gmx:100788924 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01391 3 15568958 15572082 Lapu3g01391 3 15568958 15572082 ECH
Lapu2g00416 2 3397800 3400489 Lapu3g01391 3 15568958 15572082 PCT