Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01387 ATGGATCAATTGTCGGCGATCAGCGAGGACCTGGCCGAGATCGACGGGCACATCGCCGACAATTTCCGCGCCCTATCAAATGGATTCCAGAAGTTGGAGAAGATTAAGGATTCGAATAGACAGAGCAGGCAGTTGGAAGAACTCACGGACAAAATGCGAGAATGTAAACGGCTTATCAAGGAGTTCGATAAAGAAGTCAAAGCCTTGGAGAATAGCTTTGATAGAGAAACCAACAAAATGTTGAACGAGAAAAAGCAGTCAATGATTAAAGAGTTAAACTCATATGTTGCTTTGAAAAAGCAGTATGCTACAAATATTGATCATAAACGAATTGAACTCTTTGAGGGGTCAAATGAAGGTTATGCTGAAGAAAATGGCTTGCTAGCATCCTCAATGACCAACGAACAGCTAATGGATCACGGGAATAGGATGATGGATGATACAGATCAAGCCATTGAAAGGGGAAAGAAGGTCGTTCAAGAAACAATAAATGTTGGTACGGAGACTGCAGCAGCTCTTAAGGCTCAGACGGAACAAATGAGCAGAGTTGTCAATGAGCTGGATTCTATCCATTTCTCTTTAAAGAAAGCATCACAATTGGTCAAGGAAATCGGTAGGCAGGTTGCTACTGATAAGTGTATTATGGCGCTACTCTTCCTTATTGTCATTGGAGTAATTGCTATCATTATTGTAAAGCTTGTGCACCCGGACAACAAGGACATTCGCGACATTCCAGGACTGGCTCCTCCAGTTCAGAATCGAAGACTGCTTTGGAGTCAAAACAAGTGTAAATCCGCCCCCGAATTGCATAAGAAGAAAAACCCCGCCGTGAACCGCGCCGCCAACTCCACCGGCTCCCTATCTTCACCCAAGAGCGTGAAGGACTTGTACAGAGAGAAAGAGCACAACTTCAGAGTTTTCACTTTGCAAGAGCTCAGAGATGCCACCCAAGGTTTCAATAGGACGCTCAAGCTTGGAGAAGGGGGTTTCGGAAGCGTGTATAAAGGATCCATAAGACCCTCCGATGGACAAGGTGATCCATTTCCAGTAGCTATCAAAAGGCTCAACACGCGTGGCTTCCAGGGTCATAAAGAATGGCTTGCTGAAGTTCAATTTCTAGGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGATACTGCTCCGTGGACGGAGAAAGAGGAATCCAACGGCTGTTGGTGTATGAGTTCATGCCCAACAGGAGCTTGGAGGATCACCTCTTCAATAAAAGTTTACCAACCCTGCCTTGGAAAACAAGATTGGAGATTATGCTTGGTGCTGCTCAAGGATTAGCTTATCTCCATGAAGGACTGGAAATTCAGGTGATTTACCGAGATTTCAAATCTTCAAATGTTCTATTGGATGCGGATTTCCATCCAAAGCTCTCAGATTTTGGTCTTGCAAGAGAAGGACCGCAAGGTGATCAGACTCATGTATCCACTGCGGTGGTTGGGACCCAAGGATATGCTGCACCAGAGTACATTGAAACGGGTCATCTGAAAGTTCAGAGCGACATGTGGAGTTTTGGTGTAGTGCTGTATGAGATCCTCACAGGAAGAAGATCATTGGAAAGAAACCGTCCCACAGCAGAACAAAAGCTTCTAGATTGGGTCAAACAGTACCCTGCTGACACCAGCAGGTTCGTGGTGATGATGGATCCACGTCTCAGGAACCAGTATTCTCACCAAGCAGCTCGCAAAATAGCCAAATTGGCTGATAGCTGCTTGAAGAAGAATCCAGAAGATAGACCATCAATGAGTGAGATAGTGGAAGCCTTGAAGCAAGCATTGCAACATTCAGAAACTCCAAACTCTTCTCAAGACATTGCTGAATCCTCCTCATCCCGGTCTAAATTGGTCCGAAAAAGTAAATAG 1896 0.4478 MDQLSAISEDLAEIDGHIADNFRALSNGFQKLEKIKDSNRQSRQLEELTDKMRECKRLIKEFDKEVKALENSFDRETNKMLNEKKQSMIKELNSYVALKKQYATNIDHKRIELFEGSNEGYAEENGLLASSMTNEQLMDHGNRMMDDTDQAIERGKKVVQETINVGTETAAALKAQTEQMSRVVNELDSIHFSLKKASQLVKEIGRQVATDKCIMALLFLIVIGVIAIIIVKLVHPDNKDIRDIPGLAPPVQNRRLLWSQNKCKSAPELHKKKNPAVNRAANSTGSLSSPKSVKDLYREKEHNFRVFTLQELRDATQGFNRTLKLGEGGFGSVYKGSIRPSDGQGDPFPVAIKRLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDGERGIQRLLVYEFMPNRSLEDHLFNKSLPTLPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDADFHPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADTSRFVVMMDPRLRNQYSHQAARKIAKLADSCLKKNPEDRPSMSEIVEALKQALQHSETPNSSQDIAESSSSRSKLVRKSK* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01387 631 Coils Coil 38 86 - -
Lapu3g01387 631 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 405 614 - -
Lapu3g01387 631 FunFam novel plant SNARE 11 133 212 - -
Lapu3g01387 631 MobiDBLite consensus disorder prediction 273 292 - -
Lapu3g01387 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Lapu3g01387 631 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
Lapu3g01387 631 Gene3D Transferase(Phosphotransferase) domain 1 405 626 - -
Lapu3g01387 631 SUPERFAMILY Protein kinase-like (PK-like) 301 600 IPR011009 -
Lapu3g01387 631 MobiDBLite consensus disorder prediction 604 623 - -
Lapu3g01387 631 ProSiteProfiles Protein kinase domain profile. 319 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01387 631 PANTHER OS01G0588500 PROTEIN-RELATED 274 604 - -
Lapu3g01387 631 MobiDBLite consensus disorder prediction 277 291 - -
Lapu3g01387 631 Gene3D Phosphorylase Kinase; domain 1 299 404 - -
Lapu3g01387 631 Pfam Sec20 151 231 IPR005606 GO:0005484|GO:0006890
Lapu3g01387 631 ProSitePatterns Protein kinases ATP-binding region signature. 325 353 IPR017441 GO:0005524
Lapu3g01387 631 MobiDBLite consensus disorder prediction 603 631 - -
Lapu3g01387 631 Pfam Protein tyrosine and serine/threonine kinase 323 600 IPR001245 GO:0004672|GO:0006468
Lapu3g01387 631 SMART tSNARE_6 137 204 IPR000727 -
Lapu3g01387 631 CDD SNARE_SNAP25N_23N_29N_SEC9N 139 203 IPR044766 GO:0005484|GO:0031201
Lapu3g01387 631 Gene3D - 133 212 - -
Lapu3g01387 631 SUPERFAMILY SNARE fusion complex 132 205 - -
Lapu3g01387 631 CDD STKc_IRAK 325 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01387 Lapu-Chr3 15503427 15517004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01387 272 600 Glycoside Hydrolase AT3G07070 43.068 2.64e-86 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu3g01387 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01387 - - gmx:100786966 666.766