Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01372 ATGGAACTTAGTTTTAAGCACCAACTTGGCCTTCTTTGTGTCGTACTATTTTTACCTGCACTGTCTATATCACAGGACACTTTTACGTGCTCCAGAGCAACATATTATGGTAGCCCTGATTGCTATGGGAATCCAAAGGGAGCTTGTGGCTTTGGCGAATATGGAAAAACGGTGAATGATGGAAGTGTGGCCGGAGTGTCTAGGCTATGGAGGAATGGAAGCGGCTGTGGAGCATGCTATCAGGCTAGGTGCAAGATACCACAATATTGTGACGAAAATGGAGCATTCGTGGTGGTAACAGACTATGGTGAGGGAGACAGAACAGATTTCATCATGAGCCCACGCGCCTTCTCGAGATTGGGACGCAACGCAGATGCATCTGCAGAGTTGTTCAAATATGGTGTAGTGGACATTGAATACAGAAGGGTCCCATGTAGCTATTCTGGTTACAATGTCGTGTTTAAGGTTCATGAACACAGCAGAAACCCTGACTACTTTGCTGTCGTGGTTCTCTATGTAGATGGAACAAACGATGTCACTTCTGTTGAGTTGTTTCAGCAAGACTGCCAAGAATGGAAGCCATTGCGCAGGGCCTTTGGGGCAATGTTTGACTATAGCAACCCACCAAGTGGTGAAATCTACTTGAGGTTCCAAGTTAGTGGCAGTGCAGGGATTTATTGGGTTCAGTCCAGGAATGCTATCTCTGGTGATTGGAGGGCCGGAGCAACATATGACACCATGGTGCAGCTTAATTAG 756 0.4643 MELSFKHQLGLLCVVLFLPALSISQDTFTCSRATYYGSPDCYGNPKGACGFGEYGKTVNDGSVAGVSRLWRNGSGCGACYQARCKIPQYCDENGAFVVVTDYGEGDRTDFIMSPRAFSRLGRNADASAELFKYGVVDIEYRRVPCSYSGYNVVFKVHEHSRNPDYFAVVVLYVDGTNDVTSVELFQQDCQEWKPLRRAFGAMFDYSNPPSGEIYLRFQVSGSAGIYWVQSRNAISGDWRAGATYDTMVQLN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01372 251 Pfam Expansin C-terminal domain 152 234 IPR007117 -
Lapu3g01372 251 PANTHER EXPANSIN-B3 18 249 - -
Lapu3g01372 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Lapu3g01372 251 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
Lapu3g01372 251 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
Lapu3g01372 251 CDD DPBB_EXLB_N 31 145 - -
Lapu3g01372 251 Gene3D - 20 145 IPR036908 -
Lapu3g01372 251 Gene3D - 146 247 IPR036749 -
Lapu3g01372 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Lapu3g01372 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Lapu3g01372 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Lapu3g01372 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Lapu3g01372 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Lapu3g01372 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Lapu3g01372 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01372 Lapu-Chr3 15256762 15258305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01372 3 250 Expansin Gene Family AT4G17030 56.972 2.31e-107 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01372 - - gmx:100779487 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00403 2 3298261 3300173 Lapu3g01372 3 15256762 15258305 PCT