Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01369 ATGGAACTCGGTTTGAGGCACCAACTTGGCCTTGTTTGTGTCATATTGCTCTTCCCTGCACTGTGTAACTGCAAGGAATATTTCACCAACTCAAGAGCAACCTATTATGGCAGCTCTGACGGCTACGGTACTCCAAGTGGAGGTTGCGGATTCGGGGAGTTCGGAAGAAGGATGAATTGGTATGATGGAAGAGTCGCAGGGGTCTCTGGGCTATGGAGGAACGGAGCTGGTTGTGGTACATGTTATCAGGTAAGGTGCAAAATAGCCGAACTGTGCGATGTGAATGGAGCATACCTGGTGGCAACAGACCAGGGTTATGGAGACAGAACAGATTTCGTCATGAGTCCTGTGGCCTTCTCAAGATTGGGACGCAATCAAAATGCATCTGCACAGCTTAAGAAATATGGTACAGTGGATATTGAATACAGAAGGGTTCCATGTACCTACACCGGCAACGTCTTGTTTCACATCAAGGAAAGTAGCAGCAACCCTGGTTACTTGGCTGTCGTCATTCTCAATGTAAACGGAAAATACGACGTTACTGCTGTTGAAATGTGGCAGAAAGGGCAACAACGATGGGAACCCATGCGCAGGGTCTATGGGGCAGTGTTTGACTTTGCTAATCCAGCGAGAGGTGAAATCCTCTTGAGGTTTCAAGTGGGCATTAATTGGATGATACCCAGGATCCCTATCCCTGCCAATTGGAAGCCTGGAGCAACTTATGACACCAAAGTTCAGCTTTACTAG 747 0.4766 MELGLRHQLGLVCVILLFPALCNCKEYFTNSRATYYGSSDGYGTPSGGCGFGEFGRRMNWYDGRVAGVSGLWRNGAGCGTCYQVRCKIAELCDVNGAYLVATDQGYGDRTDFVMSPVAFSRLGRNQNASAQLKKYGTVDIEYRRVPCTYTGNVLFHIKESSSNPGYLAVVILNVNGKYDVTAVEMWQKGQQRWEPMRRVYGAVFDFANPARGEILLRFQVGINWMIPRIPIPANWKPGATYDTKVQLY* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01369 248 SUPERFAMILY Barwin-like endoglucanases 14 152 IPR036908 -
Lapu3g01369 248 SUPERFAMILY PHL pollen allergen 152 242 IPR036749 -
Lapu3g01369 248 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Lapu3g01369 248 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Lapu3g01369 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Lapu3g01369 248 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Lapu3g01369 248 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Lapu3g01369 248 Gene3D - 149 248 IPR036749 -
Lapu3g01369 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 152 IPR007112 -
Lapu3g01369 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 243 IPR007117 -
Lapu3g01369 248 PANTHER EXPANSIN-B3 18 246 - -
Lapu3g01369 248 Pfam Lytic transglycolase 65 141 IPR009009 -
Lapu3g01369 248 Pfam Expansin C-terminal domain 154 225 IPR007117 -
Lapu3g01369 248 Gene3D - 20 148 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01369 Lapu-Chr3 15219326 15220500 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01369 9 247 Expansin Gene Family AT4G17030 51.837 1.46e-80 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01369 - - gmx:100778424 429.098