Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01368 ATGGAGCTTAGCTTTAAGCACCAACTAGGCCTTGTTTGTGTCATACTGCTATTTCCTGCACTGTGTCACTGCCAGGAATATACTAAATCCAGAGCAACCTTTTATAGTACCTCTGACGGCTATGGGACTCCAACGGGAGCTTGTGGATTTGGAGAATATGGAAGGAAGATGAACTGGTATGATGGAAGAGTCGCAGGGGTCTCTGGGCTATGGAGGAATGGAGTTGGCTGTGGTACATGCTATCAGGTAAAGTGCCTAATAGAAAACCTGTGCGATGAGAATGGAGCATACCTGGTGGCAACAGACCAGGGTTATGGAGACAACACAGACTTCGTCATGAGCCCACGTGCCTTCTTGGAACTGGGACGTGATCAAAATGCTTACGAAGAGCTTAAGAAATACGGTACAGTGGATATTGAATACAAAAGGGTTCCATGTACCTACACCGGCAACGTCTTGTTCTATATCAAGGAAACTAGCAGCAACCCTGGTTACTTTGCTATGGTCATTCTGAACGTAAATGGAATCAACGACGTCACTGCTGTTGAAATGTGGCAGTCTGGAGAGTGGAAGGCACTTAACAGGAACTATGGAGCAGTGTTTGACTTTCCTAACCCTCCGAGTGGCGAAATCCGGTTGAGGTTTAGGGTGAGTGGCATGTCCGATTGGGTGGATCCCAAGATTGTCATTCCTAGCAACTGGCAGCCTGGAAGCACTTATGTCACAGAGGTTCACCAGGCAAACATGCCTTGA 753 0.4728 MELSFKHQLGLVCVILLFPALCHCQEYTKSRATFYSTSDGYGTPTGACGFGEYGRKMNWYDGRVAGVSGLWRNGVGCGTCYQVKCLIENLCDENGAYLVATDQGYGDNTDFVMSPRAFLELGRDQNAYEELKKYGTVDIEYKRVPCTYTGNVLFYIKETSSNPGYFAMVILNVNGINDVTAVEMWQSGEWKALNRNYGAVFDFPNPPSGEIRLRFRVSGMSDWVDPKIVIPSNWQPGSTYVTEVHQANMP* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01368 250 Gene3D - 147 242 IPR036749 -
Lapu3g01368 250 PANTHER EXPANSIN-B3 17 244 - -
Lapu3g01368 250 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Lapu3g01368 250 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Lapu3g01368 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Lapu3g01368 250 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Lapu3g01368 250 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Lapu3g01368 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Lapu3g01368 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 242 IPR007117 -
Lapu3g01368 250 SUPERFAMILY PHL pollen allergen 152 241 IPR036749 -
Lapu3g01368 250 Pfam Expansin C-terminal domain 154 231 IPR007117 -
Lapu3g01368 250 SUPERFAMILY Barwin-like endoglucanases 13 151 IPR036908 -
Lapu3g01368 250 Gene3D - 20 146 IPR036908 -
Lapu3g01368 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 151 IPR007112 -
Lapu3g01368 250 Pfam Lytic transglycolase 64 140 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01368 Lapu-Chr3 15214231 15234209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01368 1 244 Expansin Gene Family AT4G17030 44.800 1.01e-72 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01368 - - gmx:100777265 467.233