Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01367 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCTGTATTATGCAATGCTTGTGGATCTCGATGGAGGACTAAGGGAACACTTGCAAATTATACCCCTTTGCATGCACGGGCAGAAAATGTTGATTTTGAGGATCAAAAGGTTTCCAGGGTAAAAAGCATATCATTAAATAAGAACAAAGAGGTGAAATTGGTCAAGCAAAAGCAGAACTATGATAACGCATCTGGAGGGTTCGTTCTTGATTATAATCAAGGACACGGAAAGGTTGTGGATGAAGATACAAGCAATAGATCAAGCTCAGGGTCAGCTGTCTCTAACTCGGAGAGCTGTGCTCAATTTGGTGGCACTGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCTAAAAAGAGGACATGTTCAGGTCGTCCAAAGTCTTCATCTGTTGAGAAGCTCACAAGAGACCTGTGTACTATTCTTCATGAACAACAGTCTTATTTCTCTGCATCTTCTGAAGAGGATCTTCTTTTTGAAAGTGACACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCTCGTGATGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAACAAACAATGCCTAATGAATGAAGCATATTCATTCTCTAGTGCAATTCCTTTGTATAGTGATCACAATGGCATGAACTTTTCATCTCATGGAATTGAAAAGATAAAAAACTCAGCTGACCAGATCATGCAACAAGAGAAACTTGAAAGGGACAAGTCTCAGCTTGAAAAACTACAAGTTCCTGGAAATCACAATTCACCGATGTGCTCGATAGATTTAAATGATATAGTGAACTACGAAGAGTTTATGAGGAACTTCACAAATGAAGAGCAGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATACCGCTAAATTTACTGATAGCCTTAAAAGCATGTTCAGTAGCTTCCAATTCAAGGAGAACTTGATTTATTTTCAGCAACTTCTAGGGGAAGGTGTCTTTGACATCTCTTTATTGGGGACAAAACCTGAAGAATGGAAGACATTGAAAAGGCTTGTGTTATCTAATCAGTCAAAATCAAAATGGGTTGAACACTATAATTTTCTCAAGAAATGTGAAAACAAAGCTGGAAAAATTATTGGTCCAGGATCTACTGCTGTGGAATCAAGTAATGTTACGAATGGCAAGAGAATGCGCGAGCATGACACCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGCCCCAAAAGGGTGATAATAAAGCCTATCTGTGAAGGCAAAGAAGTTATAGAAGAAGGCTCAAGCTTCAGCCCAAAAAGCCTATTTGCTTTGCCCCATGGTGTTGGTGACTCGCACATGCTGGATTCTTTGAACTTTGTTGGTGAGAGTTCTGAGGATCTGCTGTTAGATGTGCCTTCTAACAGTTCTTTTCCACAGGCAGAGCTCCTGCTCCCAACTTTAAGCTATGGTGCTCAGGTCTGCACCACTAGTAGCTCAGTACACTCAACTGTTACTCATCCTTAA 1626 0.4145 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENVDFEDQKVSRVKSISLNKNKEVKLVKQKQNYDNASGGFVLDYNQGHGKVVDEDTSNRSSSGSAVSNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCSGRPKSSSVEKLTRDLCTILHEQQSYFSASSEEDLLFESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNEAYSFSSAIPLYSDHNGMNFSSHGIEKIKNSADQIMQQEKLERDKSQLEKLQVPGNHNSPMCSIDLNDIVNYEEFMRNFTNEEQQQLLKYLPVVDTAKFTDSLKSMFSSFQFKENLIYFQQLLGEGVFDISLLGTKPEEWKTLKRLVLSNQSKSKWVEHYNFLKKCENKAGKIIGPGSTAVESSNVTNGKRMREHDTQNQNFPELKTTMRSPKRVIIKPICEGKEVIEEGSSFSPKSLFALPHGVGDSHMLDSLNFVGESSEDLLLDVPSNSSFPQAELLLPTLSYGAQVCTTSSSVHSTVTHP* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01367 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Lapu3g01367 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Lapu3g01367 541 MobiDBLite consensus disorder prediction 108 131 - -
Lapu3g01367 541 Pfam Asx homology domain 286 374 IPR028020 -
Lapu3g01367 541 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Lapu3g01367 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lapu3g01367 541 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lapu3g01367 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lapu3g01367 541 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Lapu3g01367 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 525 IPR044589 -
Lapu3g01367 541 MobiDBLite consensus disorder prediction 103 131 - -
Lapu3g01367 541 Gene3D - 282 385 IPR038108 -
Lapu3g01367 541 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01367 Lapu-Chr3 15192453 15198405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01367 1 517 C2C2-Gata Transcription Factor Family AT4G17570 50.558 2.93e-148 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu3g01367 ASXH 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01367 - - gmx:100799745 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00401 2 3282764 3289466 Lapu3g01367 3 15192453 15198405 PCT