Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01360 ATGGTGGAAAAACAATATCATACTCTTAAAAGAGAAATGGAAACTGAAACAGTGGACGTTGGTGTGAATTTGAATGCAAGACATGGACAGGGTTGTGGACAAGGTGAAACCACAACATTAGGTACTCCTAAAGCAATGGAAACTAAAATGATAGTCTCAAAGTTCACTGCTGGAAACACCTCATTAAGCATTCCAAGAGCAATGGAGACTGTAAATCTTGAGTCAAGTGGAGGCTTGAATGGACAGGGTTGTGGACAAGATGAAACCACAAAATTAGGCACTCCAAGGGAAATGGAGACCGAAATGATGGTCTCGAGTGAGGATTTGACTGTTGGAAAGACCTCATTAAGCATTCCAAGAGCAATAGAGATTGTAAATGTTGAGTCAAGTGGGGACATGATTGCTGGAAAGACAACATCATGCACCACTTCAAGAGCAATGGAGATGGAATTGGTGGATGGAGGTGGAGATTCAATTGCAGAACAAAAACAGGATCATGGACAAGGCAACCAGACAAAATTCAGCATTTCAAGGGAAATGGAGACAGAAACAGTATTTTTTAAGGCTGATTTGATGGCAACGCATAACCAATTATTTGGAGAAGGTGGAAACAGAACATCAGGCAGTCCAGGAGCAGTGAAGAATAAAATGGAAGTGACAAGCATGGAGTCAATTGCTAGATGCAAAAGGGTTTGTGGAGGAGGTGTAATAGAAGAAGGTCCATCATCACCTGAAGGAAAAGCAACACACAAGAAAAGAGATTCACCTTTTCCTGAAAGAGCAAGGTCATCTAAACGAGGTGCAAGAAGAGGCATGCGGGGTACATGGAACCAACCTACTCAGAAGAGGGCGAGAATAGGAGAAAACAAGGAAATTTGTGATTCTGGACCAAGCTCGGTAATGGAAGAAGGTCTGTCATCACCTGAAAGACAAGCAGCAAACCAGAAAAGAGGTTCACCTTTGCTTGGAAGAGTTAAGTCATGTAAACGAGGCACAAAAAGAGGCATGCAGGGTACATCAAGCCAACCTACTCAGAAGAGGGTGAGAATAGTAGAACAAAACGAAGAAATTCGTAATCCTGGACCAATCTCCATAATGGAAAATGGTCTATCATCACCTGAAAGACAAGCAGCAAACAAGAAAATAGGTTCACCTTCATCTGAAAGAGTAAGGCCATGTAAGAAGACCATTCTTGCATGGTTGACAGACTCTAAGATTATTAAAGAATATGATCGAGTAAGCTATAAGAGTGCCACAATGAAAAAGGCATTAGAAGGAAGGATTACAGGGGGTGGAATTCTCTGCAGCTGTTGCCTGGAGGAGATATCAATGTGGACCTTTGAGAAGCATGCTGGAAGTGATCTTAGACAGCCCTATAAACATATTTACTTTCACAGACAACGCAAATCCCTCCGAAAATGCCTGATTGATGTTTGGAAAGATGCCCGGGAACAAAAACGTCGGCGTATGTTTTTGTATGTGCCAAAAGAAACTGATGCAGACCAATATGATGATATTTGTTCAGTCTGTGGCGATGGGGGAGACTTAATCTGTTGTGACAAGTGTCCTTCCACATATCATTTCTCTTGCATGAATATAGAGAGGGTTCCCCAAAATGAGTGGTTCTGTCCATATTGTGTATGCAAACACTGTGGGCTTGTTGTGGACCTGGTTGTGGAGAAAAAAGAATGCTATGAGAAAAAAGAAGGCTTCAAGTGCTCCCAATGTGACAAGAAGTATCATCTGGAGTGCTTTGAAAAATTTGAAAAAGAATCCTCAAAACAAACTCTGGACTTTAACCCTTCAAGATCATATTGTGGGCGAGGTTGCCAAGGGATATACCAGAAAATGGGAGTATATCTTGGAATCAGAATTGATTATTCGGCAAAATACTCTTGGAGGATTATCCGCCCAATGGAGACATACAAGAAGAATCCTGCAGATACGAGTATATTCTTAGAAAACAATTCAAAGGTTGCAGTAACTTGGATGTTAATGAAAGAAGCTTTTGAGAAATTACATGACAGGAATACGGGCATCAATGTGGTTCGAAATATAGTTTACAGCTGCAAGTCAAATTTAACCAGGATCGATTTTAGCCGTTTTTATAATTTTGTTCTGGAGGAAGATGATGAGATCATTGCTGCAGCTTGTATAAGATTTCACGGGACAAGGATTGCAGAAATGCCATTTATTGCTACAGATATGGCACACAGGGGCCGAGGAGTTTGCCAGGAATTAATGAGGGTAATTGAATCGTTCCTATGCTATCTTAAAGTTGAAAACTTGATAATTCCATCTGCTGAGGAGACTTGTGATATGTGGAAGCGTAAGTTCAAGTTTACTGAGGTGAGTGAAGAGCTGAAGAAAGAAATATCCTCCTATCAAATTTTGATGTTCCCTTGTGCTGTAAGACTGTACAAGGACTTGTCAGCAAGCACAGCAGACATTAAGAATTACCTGGAACCACAAACAGAGCATGCAGAGGTTACCGCTAGAAAGTGA 2505 0.4108 MVEKQYHTLKREMETETVDVGVNLNARHGQGCGQGETTTLGTPKAMETKMIVSKFTAGNTSLSIPRAMETVNLESSGGLNGQGCGQDETTKLGTPREMETEMMVSSEDLTVGKTSLSIPRAIEIVNVESSGDMIAGKTTSCTTSRAMEMELVDGGGDSIAEQKQDHGQGNQTKFSISREMETETVFFKADLMATHNQLFGEGGNRTSGSPGAVKNKMEVTSMESIARCKRVCGGGVIEEGPSSPEGKATHKKRDSPFPERARSSKRGARRGMRGTWNQPTQKRARIGENKEICDSGPSSVMEEGLSSPERQAANQKRGSPLLGRVKSCKRGTKRGMQGTSSQPTQKRVRIVEQNEEIRNPGPISIMENGLSSPERQAANKKIGSPSSERVRPCKKTILAWLTDSKIIKEYDRVSYKSATMKKALEGRITGGGILCSCCLEEISMWTFEKHAGSDLRQPYKHIYFHRQRKSLRKCLIDVWKDAREQKRRRMFLYVPKETDADQYDDICSVCGDGGDLICCDKCPSTYHFSCMNIERVPQNEWFCPYCVCKHCGLVVDLVVEKKECYEKKEGFKCSQCDKKYHLECFEKFEKESSKQTLDFNPSRSYCGRGCQGIYQKMGVYLGIRIDYSAKYSWRIIRPMETYKKNPADTSIFLENNSKVAVTWMLMKEAFEKLHDRNTGINVVRNIVYSCKSNLTRIDFSRFYNFVLEEDDEIIAAACIRFHGTRIAEMPFIATDMAHRGRGVCQELMRVIESFLCYLKVENLIIPSAEETCDMWKRKFKFTEVSEELKKEISSYQILMFPCAVRLYKDLSASTADIKNYLEPQTEHAEVTARK* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01360 834 SMART PHD_3 506 547 IPR001965 -
Lapu3g01360 834 MobiDBLite consensus disorder prediction 300 314 - -
Lapu3g01360 834 PANTHER PHD FINGER PROTEIN 12 298 817 IPR042163 GO:0003714|GO:0045892
Lapu3g01360 834 Gene3D - 678 799 - -
Lapu3g01360 834 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 664 811 IPR000182 GO:0016747
Lapu3g01360 834 MobiDBLite consensus disorder prediction 244 265 - -
Lapu3g01360 834 Pfam PHD-finger 506 548 IPR019787 -
Lapu3g01360 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 571 IPR013083 -
Lapu3g01360 834 CDD PHD2_CHD_II 507 546 - -
Lapu3g01360 834 MobiDBLite consensus disorder prediction 237 318 - -
Lapu3g01360 834 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 525 592 IPR002219 -
Lapu3g01360 834 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 694 787 IPR016181 -
Lapu3g01360 834 CDD NAT_SF 705 755 - -
Lapu3g01360 834 Pfam Tify domain binding domain 426 476 IPR032308 -
Lapu3g01360 834 SUPERFAMILY FYVE/PHD zinc finger 477 549 IPR011011 -
Lapu3g01360 834 ProSiteProfiles Zinc finger PHD-type profile. 504 549 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01360 Lapu-Chr3 15061513 15069275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01360 385 812 PHD Transcription Factor Family AT4G14920 40.000 4.37e-98 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu3g01360 TDBD 2.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01360 - - pvu:PHAVU_009G190800g 1338.55