Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01357 ATGTACGGACTTCATAGTACATACGAATCAGATTTGGCCCTCTGTTCGATTCGCCGCCACTTGCTCGGCGAGTCCGAATCAGTACTCGGAGCCCCGACATGTGTATCGGGTCGGACCTCCGCTGTCGGCATCTTGTACTCCTGTTTGAGCGACAATTGGGGCGACCTTCCGTTAAAGGAGGATGATTCCGAAGATATGGTGCTCTACGGCGTGCTCCGTGACGCCGTGAACGTGGGGTGGGTCCCATCTCTTGAGGCCGGGTCGCCCGACAGCGTGTTGTCGGGTTTTCCAACTGATTTCACGGTGAAGCTGGAACCCGACGTCATGCCGACGATTACGAGTCCACCTCCTCCGACATCGGTGGGGAAGCAGGAGAAGAAGGCTTCTCCGGCGAAGGGGAAGCACTACCGCGGCGTGCGGCAGCGACCGTGGGGGAAGTTCGCGGCGGAGATCCGGGACCCGGCGAAGAACGGGGCGCGGGTTTGGCTGGGAACGTTTGAGACCGCCGAGGATGCGGCTTTGGCGTACGACCGTGCTGCATACCGTATGCGGGGGTCGAGGGCGTTGCTGAATTTTCCGTTGAGAGTTAACTCCGGAGAGCCCGACCCGGTGAGGGTGACGTCGAAGCGGTCTTCATCGCCGGAAAGTGGGGCGGCTCCGGCGAAGAGGAAGAAGGTGGGGGAGTCGGGGCAAGTGGGAAGTCAAGTGGCAGAGTGTACACGTGGCGAGCAGCTATCGGTTAGCTGA 747 0.6064 MYGLHSTYESDLALCSIRRHLLGESESVLGAPTCVSGRTSAVGILYSCLSDNWGDLPLKEDDSEDMVLYGVLRDAVNVGWVPSLEAGSPDSVLSGFPTDFTVKLEPDVMPTITSPPPPTSVGKQEKKASPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSSPESGAAPAKRKKVGESGQVGSQVAECTRGEQLSVS* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01357 248 MobiDBLite consensus disorder prediction 199 248 - -
Lapu3g01357 248 FunFam Ethylene-responsive transcription factor 2 134 194 - -
Lapu3g01357 248 Pfam AP2 domain 135 185 IPR001471 GO:0003700|GO:0006355
Lapu3g01357 248 CDD AP2 134 193 IPR001471 GO:0003700|GO:0006355
Lapu3g01357 248 ProSiteProfiles AP2/ERF domain profile. 135 193 IPR001471 GO:0003700|GO:0006355
Lapu3g01357 248 PANTHER DNA-BINDING DOMAIN 122 221 IPR044808 GO:0003700|GO:0009873
Lapu3g01357 248 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Lapu3g01357 248 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Lapu3g01357 248 MobiDBLite consensus disorder prediction 233 248 - -
Lapu3g01357 248 MobiDBLite consensus disorder prediction 107 136 - -
Lapu3g01357 248 SUPERFAMILY DNA-binding domain 135 195 IPR016177 GO:0003677
Lapu3g01357 248 SMART rav1_2 135 199 IPR001471 GO:0003700|GO:0006355
Lapu3g01357 248 Gene3D AP2/ERF domain 134 196 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01357 Lapu-Chr3 15015486 15016826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01357 9 247 AP2-EREBP Transcription Factor Family AT4G17500 54.244 7.68e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g01357 AP2 9.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01357 K09286 - gmx:100803653 358.992