Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01356 ATGGCTAACGCAGCTGAACTTTTAGCTTTGAATCGCATCAAGTTGCATCTTTTGGGTGAACTCTCTCCACTGCCCACTCCCCAAAATAAACAACCTTCCTTCCAATTTCAAGAAACAAACCCTAGCCCTTCTCAATCTTCTTCCTCTGACTCTTCCCTCTCCTTCGATCATTACCTCACTGACCTCCTCGAACCTGAATTTCAATTCCCCACTTTCAAATTCGACTCCAAACCCCAAATAATCGACCTCCAGACCCCCAAATCCCTCACGTCGCTTGAGAAGAAACCTCAACTGAATCGGAAACCCTCGCTACAAATCTCTCTCCCCAAGAAGACCGAGTGGATCCAATTTGGGAACCCGGATCCCAACCCCGAGGTCGTCTTGCCAGAGAACCAGCCCGAGAAGAAGCACTACAGAGGAGTCCGGCAACGGCCTTGGGGGAAGTTCGCCGCCGAGATCCGCGACCCGAACAAGCGCGGCTCGAGAGTGTGGCTTGGAACATTCGACACCGCCATCGAAGCCGCCAAGGCCTACGACCGCGCCGCCTTCAGGCTCCGGGGCTCCAAGGCCATCCTCAACTTCCCGCTTGAAGCAGGCGCGATGGCGGAGATCACCGACGCTGAAGGCGAGAGGAAGCGGCGGCGCGAGGAGGAGGAGGAGGTGGAGGAAGTGAAGGCGGTGGTGAAGAAGGAGAAAACGACGGGACAGGAGGTGAACTGTTTTAGAGAGATGCCGTTAACGCCGTCTATGTGGACCGGGTTCTGGGATAGTGACGTGAAGGAGGTTTTCAACGTTCCGCCGTTGTCGCCGTTATCTCCTCTTCCGGCTTTTGGATTTTCACCTCTCGTGGTTGTTTGA 858 0.5466 MANAAELLALNRIKLHLLGELSPLPTPQNKQPSFQFQETNPSPSQSSSSDSSLSFDHYLTDLLEPEFQFPTFKFDSKPQIIDLQTPKSLTSLEKKPQLNRKPSLQISLPKKTEWIQFGNPDPNPEVVLPENQPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRLRGSKAILNFPLEAGAMAEITDAEGERKRRREEEEEVEEVKAVVKKEKTTGQEVNCFREMPLTPSMWTGFWDSDVKEVFNVPPLSPLSPLPAFGFSPLVVV* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01356 285 Coils Coil 204 234 - -
Lapu3g01356 285 CDD AP2 136 195 IPR001471 GO:0003700|GO:0006355
Lapu3g01356 285 SUPERFAMILY DNA-binding domain 137 196 IPR016177 GO:0003677
Lapu3g01356 285 SMART rav1_2 137 201 IPR001471 GO:0003700|GO:0006355
Lapu3g01356 285 Pfam AP2 domain 137 187 IPR001471 GO:0003700|GO:0006355
Lapu3g01356 285 Gene3D AP2/ERF domain 136 197 IPR036955 GO:0003700|GO:0006355
Lapu3g01356 285 FunFam Ethylene-responsive transcription factor 2 136 197 - -
Lapu3g01356 285 ProSiteProfiles AP2/ERF domain profile. 137 195 IPR001471 GO:0003700|GO:0006355
Lapu3g01356 285 PANTHER DNA-BINDING DOMAIN 96 216 IPR044808 GO:0003700|GO:0009873
Lapu3g01356 285 PRINTS Ethylene responsive element binding protein signature 177 197 IPR001471 GO:0003700|GO:0006355
Lapu3g01356 285 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Lapu3g01356 285 MobiDBLite consensus disorder prediction 24 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01356 Lapu-Chr3 14991667 14992818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01356 1 285 AP2-EREBP Transcription Factor Family AT5G47230 50.165 1.87e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g01356 AP2 6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01356 K09286 - gmx:100800453 381.333