Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01353 ATGCTCATAGAGGAATTGGAGGTGGGTGACATAGGAGAAGGTGAGGAGGAAGGAGGGTTGTCGTATGTGGGCTATGATGCAAAGAGGGTGTTGGTTGGAGCAGGTGCTCGTGTGCTATTCTACCCAACCCTTTTTTACAATGTTGTCAGGAATAAGATCCAGGCTGAATTTCGATGGTGGGATAAGGTTGATGAGTTCATAATACTAGGCGCTGTTCCATTTCCTATTGATGTTCCACATTTGAAGGAGCTTGGTGTTCGTGGGGTCATCACATTGAATGAGTCATATGAAACTTTGGTTCCGACAACATTATATTATACTCACGGAATTAACCACTTAGTGATCCCTACTAGAGATTACTATTTTGCTCCTTCATTGCATGACATACGGCGTGCTGTGAATTTCATACATGAAAATGCATTATCTGGACGCACTACATATGTGCATTGCAAAGCTGGACGCGGTCGCAGCACAACTATTGTTATTTGTTATCTGGTGCACCACAAAATGATGACACCTGATGTTGCATATGATTATGTGAAATCTATTCGACCAAGGGTGCTTCTAGCTTCCTCTCAGTGGCAAGTTGTCCAAGAATACTACCACCATATTATGTTGAAGAGGACTGTTGGATGTGCTCCTACAACGAATCTATTAGTAAAGGCTTCTCAAGGGGCAATAGGTTCACGAGATCTTGTGGTGTTTGATGACAATTCTGTAGTCATGGTAACTGACTCAGACTTAGAAGGTTACAACCCAAGTAATCAATCAATAACTGTGGCAAGTGAAATTTGGGCAGATTTAAGTGTTGTATATCGTGTAAGAGTTGCTGGACAAGCGGCATTGGAGAGAATATCATGCCTTTGGCTACGATATGGTACTACTAACCACAATATTTTTACAGAGAAACCAAGCAATCATCTCTTGGGAGAAATTAATGTTGATATCCATATGTACTGA 960 0.4146 MLIEELEVGDIGEGEEEGGLSYVGYDAKRVLVGAGARVLFYPTLFYNVVRNKIQAEFRWWDKVDEFIILGAVPFPIDVPHLKELGVRGVITLNESYETLVPTTLYYTHGINHLVIPTRDYYFAPSLHDIRRAVNFIHENALSGRTTYVHCKAGRGRSTTIVICYLVHHKMMTPDVAYDYVKSIRPRVLLASSQWQVVQEYYHHIMLKRTVGCAPTTNLLVKASQGAIGSRDLVVFDDNSVVMVTDSDLEGYNPSNQSITVASEIWADLSVVYRVRVAGQAALERISCLWLRYGTTNHNIFTEKPSNHLLGEINVDIHMY* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01353 319 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 203 IPR029021 -
Lapu3g01353 319 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 290 - -
Lapu3g01353 319 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
Lapu3g01353 319 FunFam Dual specificity phosphatase domain protein 59 206 - -
Lapu3g01353 319 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Lapu3g01353 319 Pfam Dual specificity phosphatase, catalytic domain 79 201 IPR000340 GO:0008138|GO:0016311
Lapu3g01353 319 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Lapu3g01353 319 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Lapu3g01353 319 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Lapu3g01353 319 CDD PTPMT1 59 201 IPR044596 GO:0004721
Lapu3g01353 319 SMART ptp_7 101 205 IPR003595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01353 Lapu-Chr3 14957493 14961817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01353 28 319 Protein tyrosine phosphatase (PTP) family AT2G35680 61.667 8.96e-125 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01353 - - gmx:100790413 530.406