Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01345 ATGGACATGGAAGAATCAAACCCTTTGGAAAGGCAACTTCAACCAACCACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCATCCTCCATAGACCAACAACAACCCACTAACTCCAAGGACAAAAGCAACAAGAGGAACAACGTTAATACCAACCATCCTACGTACAGAGGAGTGCGCATGCGCCAATGGGGCAAATGGGTATCAGAAATCAGAGAGCCAAGGAAGAAGTCAAGAATTTGGCTTGGAACTTTTCCCACCCCGGATATGGCGGCTCGAGCCCACGACGTCGCCGCTCTCACCATCAAAGGCAGCTCCGCTTTCCTCAATTTCCCCGAATTAGCTGCCGAGCTCCCCCGCCCCGCCACCAACTCCCCCAAGGATATCCAAGTGGCCGCCGCCAAAGCCGCCGCCTTGGATTTCGGCCACCCAAGCCATGAAGCTGAGTCTGAGCTGAGCCGAGCCGGCTCCATTTCGAATTCTTCATCCAATTCGTCATTGCAGGGTGAGGACGACACATTCATGGACCTTCCTGATCTCTCTCTGGACTTGAGCCATGGAGCTGATGAGTTTCATTATTCCTCGGCTTGGCTTGTAGCCGGACCCGAACTGGGTTTTCGGCTTGAGGAGCCTTTTCTTTGGGAATCATATTAA 687 0.5109 MDMEESNPLERQLQPTTSSSSSSSSSSSSSSSSSSSSSSSSIDQQQPTNSKDKSNKRNNVNTNHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAFLNFPELAAELPRPATNSPKDIQVAAAKAAALDFGHPSHEAESELSRAGSISNSSSNSSLQGEDDTFMDLPDLSLDLSHGADEFHYSSAWLVAGPELGFRLEEPFLWESY* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01345 228 MobiDBLite consensus disorder prediction 1 69 - -
Lapu3g01345 228 SUPERFAMILY DNA-binding domain 66 124 IPR016177 GO:0003677
Lapu3g01345 228 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Lapu3g01345 228 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Lapu3g01345 228 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Lapu3g01345 228 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Lapu3g01345 228 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Lapu3g01345 228 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Lapu3g01345 228 MobiDBLite consensus disorder prediction 155 183 - -
Lapu3g01345 228 MobiDBLite consensus disorder prediction 163 182 - -
Lapu3g01345 228 MobiDBLite consensus disorder prediction 9 68 - -
Lapu3g01345 228 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700|GO:0006355
Lapu3g01345 228 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
Lapu3g01345 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 46 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01345 Lapu-Chr3 14810288 14811496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01345 56 224 AP2-EREBP Transcription Factor Family AT2G44940 49.510 4.60e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g01345 AP2 8.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01345 - - vum:124847320 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00375 2 3096540 3097292 Lapu3g01345 3 14810288 14811496 PCT