Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01343 ATGGCACCAAGGATCAATGATGGAACAGGCAAGAGATCAGCCATGAACAGAGGTGCATGGACCCCAGAGGAAGACAGAAAGCTTGCCCAATGCATTGAAATTCATGGTGCAAAGAGGTGGAAGACAGTTGCTTTGAAATCAGGTTTGAATAGATGTGGGAAGAGTTGCAGGCTGAGATGGTTAAACTATCTGAGACCTAATATCAAGAGGGGAAACATATCAGATGAAGAAGAGGATTTGATTCTTAGGCTTCACAGACTCTTGGGAAACAGGTGGTCTTTGATAGCTGGTAGGCTTCCAGGACGAACAGACAATGAAATTAAAAATTATTGGAATTCTCATTTGTGCAAAAAAGTAAATCAAAAAGAGGAGAGACCAGAATCTTCCACAACACAAGAAATTATTACCCAGAATCAGAATGCTGGGGAGAACCGTGCAATGTCAGAGAACGAGGTTGCAACTAACGAAAATGGTAACTTAGATGTTACTTTCGACGTTGACGAATTTTTCAACTTCTCAGAGGAATCCTGTGGGATAGAGTGGCTGAACAAGTACTTGGATTTTTAA 567 0.4127 MAPRINDGTGKRSAMNRGAWTPEEDRKLAQCIEIHGAKRWKTVALKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKEERPESSTTQEIITQNQNAGENRAMSENEVATNENGNLDVTFDVDEFFNFSEESCGIEWLNKYLDF* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01343 188 CDD SANT 74 115 IPR001005 -
Lapu3g01343 188 Gene3D - 73 147 - -
Lapu3g01343 188 FunFam transcription repressor MYB5-like 74 141 - -
Lapu3g01343 188 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lapu3g01343 188 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lapu3g01343 188 CDD SANT 19 64 IPR001005 -
Lapu3g01343 188 FunFam MYB-related transcription factor 16 69 - -
Lapu3g01343 188 MobiDBLite consensus disorder prediction 1 21 - -
Lapu3g01343 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Lapu3g01343 188 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Lapu3g01343 188 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lapu3g01343 188 MobiDBLite consensus disorder prediction 130 150 - -
Lapu3g01343 188 MobiDBLite consensus disorder prediction 121 150 - -
Lapu3g01343 188 SMART sant 16 66 IPR001005 -
Lapu3g01343 188 SMART sant 69 117 IPR001005 -
Lapu3g01343 188 Gene3D - 10 70 - -
Lapu3g01343 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Lapu3g01343 188 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Lapu3g01343 188 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01343 Lapu-Chr3 14771137 14772527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01343 10 168 MYB Transcription Factor Family AT5G40330 47.904 5.28e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g01343 Myb_DNA-binding 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01343 K09422 - gmx:100799575 340.117