Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01331 ATGGATAATAGACACAAATGCAAGCTCTGTTCAAGGTCTTTCACCAATGGCAGAGCCCTTGGTGGTCACATGAAGGCTCATCTCGCTACTCTCCCTCTTCCTCCAAAGCCTCAAACTTTAACTCACTCTTCCTTCACTTATTCCTCTTCTTCAGACTCCGAACAAGAACACCTCAAAGAAGAAGATTCTCTTAGTTACGCGCTCAGGGAGAATCCTAAGAAGAGCTTCAGAGTAACGGATCCTGAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAGCGATCCAAGCGGAACCGGAAATCCACCATGCTCAAGCTCAGCTTCGTGGTGTCCACACCTCTCGTCACCGAGCATGAACCTGTGAGTTCCGTCTCCGACACCTCCCCCGAGGAAGACGTAGCCATGAGCCTCATGATGCTCTCCCGCGACACTTGGAACGTAGTCACCAATGCGGGTCCACAGCAGAGATCACAGAGGCGCTGCACCGGATCAGAGACCAAGCTCAAGAAACTCCGCGGCAAGTACCTCTGCCACACTTGCGGCAAAGCCTTTCGATCCTCTCGGGCCTTGGGGAGTCACAGAACCATTTGTTGCCGTCAAGAGGAACCTCAAAATCAAAACAACAACAACAACAATAGTATTAAGGTTTTTGAATGTCCCTTTTGTTACAAGGTGTTCGGCTCTGGTCAAGCTCTGGGTGGACACAAGAGATCTCACCTAATCCCCTCGTCATCTTCAACTGTTAACGATTCCGTTAAATTCAAACAGACCTTCATAGATCTCAACATGCCAGCGCCACCAGAGGACGACGACCTTAGTGTGGTCTCTGACGCCTAA 846 0.5024 MDNRHKCKLCSRSFTNGRALGGHMKAHLATLPLPPKPQTLTHSSFTYSSSSDSEQEHLKEEDSLSYALRENPKKSFRVTDPEDRESETESKNPTRQRSKRNRKSTMLKLSFVVSTPLVTEHEPVSSVSDTSPEEDVAMSLMMLSRDTWNVVTNAGPQQRSQRRCTGSETKLKKLRGKYLCHTCGKAFRSSRALGSHRTICCRQEEPQNQNNNNNNSIKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSVKFKQTFIDLNMPAPPEDDDLSVVSDA* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01331 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Lapu3g01331 281 MobiDBLite consensus disorder prediction 32 107 - -
Lapu3g01331 281 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Lapu3g01331 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 242 IPR013087 -
Lapu3g01331 281 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Lapu3g01331 281 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 281 IPR044303 GO:0006355
Lapu3g01331 281 SMART c2h2final6 220 242 IPR013087 -
Lapu3g01331 281 SMART c2h2final6 178 198 IPR013087 -
Lapu3g01331 281 SMART c2h2final6 5 27 IPR013087 -
Lapu3g01331 281 MobiDBLite consensus disorder prediction 53 95 - -
Lapu3g01331 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 206 IPR013087 -
Lapu3g01331 281 MobiDBLite consensus disorder prediction 36 52 - -
Lapu3g01331 281 Gene3D Classic Zinc Finger 175 242 - -
Lapu3g01331 281 Pfam C2H2-type zinc finger 4 29 - -
Lapu3g01331 281 Pfam C2H2-type zinc finger 219 243 - -
Lapu3g01331 281 Pfam C2H2-type zinc finger 178 197 - -
Lapu3g01331 281 SUPERFAMILY beta-beta-alpha zinc fingers 218 243 IPR036236 -
Lapu3g01331 281 SUPERFAMILY beta-beta-alpha zinc fingers 4 198 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01331 Lapu-Chr3 14624609 14638703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01331 1 276 C2H2 Transcription Factor Family AT1G02030 36.774 2.40e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g01331 zf-C2H2_6 3.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01331 - - gmx:100806512 373.244