Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01323 ATGACTTCTTCAACTATGTTGTTGCTGGTTTTGTTCATGATACTATGTATTTCACATCCCTCCTTCCAAATGCTACTCTTGCCACTTAAACACACTCTTTCCCAAGCCCAATTCAACACCACCCACCACCTCTTGAAATCCACCTCCGCCCGTTCCGCCGCCCGCTTCCGCCGCCAGCTCTCCCTCCCCCTCTCACCGGGCAGCGACTACACTCTCTCATTCAACCTCGGCCCCCAGGCCCAGCCCATAACCCTCTACATGGACACAGGCAGTGACTTAGTCTGGTTCCCCTGCGCCCCTTTCAAATGTATTCTCTGCGAGGGAAAGCCCAGCGAGCCCAACGCCTCTCCCCCAACCAACATCACCCGAAGCGTCGCCGTTTCATGCAAGTCTCTCGCATGCTCCGCCGCTCACAACTTAGCCTCCTCTTCCGATCTCTGCGCAATGGCTCGTTGCCCTCTCGAATCAATCGAAACCTCCGATTGCGCCAATTTCAAGTGTCCACCGTTTTACTACGCCTACGGCGACGGAAGCTTAATCGCCCGTCTATATCGTGACACGCTCTCTCTCTCTTCTCTGTCTCTCCGAAACTTCACCTTCGGTTGCGCTCACACAGCCCTCGCCGAACCTACCGGAGTTGCCGGATTCGGCCGCGGTTTGCTCTCTCTTCCGGCGCAGCTAGCCACTCTCTCTCCTCAACTTGGAAACCGCTTTTCATACTGCCTTGTTTCTCACTCGTTTGACTCTGAGCGAGTTCGCAAACCGAGTCCACTCATTCTCGGTCGTTACGAGGAAAAGGAAAAGGAGAAGATCAGTGGCGGTGGAATGGTCGAGTTTGTGTACACGCCTATGCTTGAAAATCCTAAGCATCCTTATTTTTATACCGTTGGCTTAATCGGAATCTCCGTAGGGAAAAGAACTATTCCAGCGCCGGAGATGCTGCGGCGGGTGAACCATGGAGGAGACGGTGGAGTGGTTGTGGATTCCGGCACAACATTCACGATGTTGCCGGCGGGGTTTTATAACTCGGTGGTTGACGAGTTTGACCGCCGAGTCGGGCGAGTCAACCAGCGCGCGCGTAAGATTGAGGAAAAAACTGGACTCGCGCCGTGCTATCATTTGAAGGCGGTGGCGGAAGTGCCGGTTGTGACGCTGCGTTTTGCTGGAGGGAATTCCAGTGTGGTGCTGCCTAGGAAGAATTATTTTTACGAGTTTTTGGACGGTAGCGATGAGACAAAGGGGAAAAGGAGGGTGGGGTGTTTGATGCTGATGAACGGTGGAGACGAGGGTGAGTTAAGCGGTGGGCCCGGCGCCACACTTGGGAATTACCAGCAGCAAGGATTTGAGGTCGTGTATGACCTGAAAGAGAAGCGCGTGGGATTCGCAAAGAGGCATTGCGCGTCGCTTTGGGAGAGACTGAATCGTGACAAAAACTAG 1437 0.54 MTSSTMLLLVLFMILCISHPSFQMLLLPLKHTLSQAQFNTTHHLLKSTSARSAARFRRQLSLPLSPGSDYTLSFNLGPQAQPITLYMDTGSDLVWFPCAPFKCILCEGKPSEPNASPPTNITRSVAVSCKSLACSAAHNLASSSDLCAMARCPLESIETSDCANFKCPPFYYAYGDGSLIARLYRDTLSLSSLSLRNFTFGCAHTALAEPTGVAGFGRGLLSLPAQLATLSPQLGNRFSYCLVSHSFDSERVRKPSPLILGRYEEKEKEKISGGGMVEFVYTPMLENPKHPYFYTVGLIGISVGKRTIPAPEMLRRVNHGGDGGVVVDSGTTFTMLPAGFYNSVVDEFDRRVGRVNQRARKIEEKTGLAPCYHLKAVAEVPVVTLRFAGGNSSVVLPRKNYFYEFLDGSDETKGKRRVGCLMLMNGGDEGELSGGPGATLGNYQQQGFEVVYDLKEKRVGFAKRHCASLWERLNRDKN* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01323 478 Coils Coil 345 365 - -
Lapu3g01323 478 FunFam aspartic proteinase nepenthesin-1 268 471 - -
Lapu3g01323 478 Gene3D Acid Proteases 61 261 IPR021109 -
Lapu3g01323 478 PANTHER ASPARTYL PROTEASES 7 460 IPR001461 GO:0004190|GO:0006508
Lapu3g01323 478 SUPERFAMILY Acid proteases 65 471 IPR021109 -
Lapu3g01323 478 CDD pepsin_A_like_plant 70 466 IPR034161 -
Lapu3g01323 478 ProSiteProfiles Peptidase family A1 domain profile. 70 462 IPR033121 -
Lapu3g01323 478 Pfam Xylanase inhibitor C-terminal 294 462 IPR032799 -
Lapu3g01323 478 FunFam Probable aspartyl protease At4g16563 60 260 - -
Lapu3g01323 478 Pfam Xylanase inhibitor N-terminal 70 261 IPR032861 -
Lapu3g01323 478 Gene3D Acid Proteases 273 471 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01323 Lapu-Chr3 14531668 14533416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01323 36 469 Miscellaneous Gene Families AT1G77480 25.054 4.32e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01323 - - gmx:100805699 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01323 3 14531668 14533416 Lapu3g01323 3 14531668 14533416 ECH
Lapu3g01323 3 14531668 14533416 Lapu9g00922 9 13970300 13974005 ECH
Lapu2g00348 2 2888575 2889966 Lapu3g01323 3 14531668 14533416 PCT