Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01304 ATGGATTTGAAGTCCTCTCATGTTTCTCCTGTTCTCACTGACCCTGTTCCCGTCAACAAGTCAAGGCTTCGAATGCATTCTAGTCTGATAGCTTATTCCCAGCAAGATTCACCTGTCTCTCCAGGGAAGTGCTCAAGAAGCAATTCAAGGAAAAGTACAGGGAGTGTCGATGATGTGAGGTCCAATGGCTGGTTGGATGCCATGAAGGCTTCTTCCCCTCCAAGGAAGAAGCTACTTAAAGGGTCCGGCGTTCAGGTTGCTTCAATTGACTTTGACATTGAAGACTATTGTACATGGATGCTTGAATATCCTTCAGCACTAGACTCTTTTGAGAAAATCGTTGACCTTGCACAGAATAAGAAGATTGCCATGTTTCTAGATTATGACGGCACACTTTCACCGATAATGCGTACAACTGTGAGAAGTGTGGCAACATATTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATCTTGTTAAGTTAACAGAACTCTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACTTTGCCCAAAAATCACCCAAATTGTGTAAAGTCTACAGACCATGAGGGAAAGGAAATAACTCTCTTTCAACCTGCGAGAGAATTCCTGCCTATGGTTGATGAGGTTTTTAGAACCCTCGTCGAGATTACCAAAGATATACAAGGCGCCAAAGTTGAGAACCACAAATTTTGCGTTTCTGTACATTACCGTAATGTAGAGGAGAATAATTGGACAACAGTTGGACAACGTGTCCATGATGTCTTGCAAAATTACCCTCGTTTACGTTCAACTCATGGACGGAAGGTTTTAGAAGTCCGTCCTGTGGTTGATTGGAATAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAGGATTAAATGATACTGATGATGTACTTCCCATCTACATTGGAGATGATAAAACTGACGAAGATGCATTCAAGGTGCTGCGAGAGAGCAATAGAGGTTATGGGATTTTGGTTTCGTCGGTGCGGAAAGAAAGCAATGCCTTCTACTCTCTCCGAGACCCCAATGAGGTCATGAAATTTCTCCAACTCTTGGTGAACTGGAAGAGACAAGAAAGGAAGCATGGGAAGAAGTAA 1140 0.4281 MDLKSSHVSPVLTDPVPVNKSRLRMHSSLIAYSQQDSPVSPGKCSRSNSRKSTGSVDDVRSNGWLDAMKASSPPRKKLLKGSGVQVASIDFDIEDYCTWMLEYPSALDSFEKIVDLAQNKKIAMFLDYDGTLSPIMRTTVRSVATYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSETLPKNHPNCVKSTDHEGKEITLFQPAREFLPMVDEVFRTLVEITKDIQGAKVENHKFCVSVHYRNVEENNWTTVGQRVHDVLQNYPRLRSTHGRKVLEVRPVVDWNKGKAVEFLLESLGLNDTDDVLPIYIGDDKTDEDAFKVLRESNRGYGILVSSVRKESNAFYSLRDPNEVMKFLQLLVNWKRQERKHGKK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01304 379 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 32 375 IPR044651 GO:0004805|GO:0005992
Lapu3g01304 379 SUPERFAMILY HAD-like 123 371 IPR036412 -
Lapu3g01304 379 FunFam Trehalose 6-phosphate phosphatase 217 376 - -
Lapu3g01304 379 Pfam Trehalose-phosphatase 125 356 IPR003337 GO:0003824|GO:0005992
Lapu3g01304 379 MobiDBLite consensus disorder prediction 34 60 - -
Lapu3g01304 379 FunFam Trehalose 6-phosphate phosphatase 211 287 - -
Lapu3g01304 379 Gene3D - 122 196 IPR023214 -
Lapu3g01304 379 Gene3D - 206 379 IPR023214 -
Lapu3g01304 379 NCBIfam trehalose-phosphatase 120 367 IPR003337 GO:0003824|GO:0005992
Lapu3g01304 379 MobiDBLite consensus disorder prediction 34 59 - -
Lapu3g01304 379 NCBIfam HAD-IIB family hydrolase 124 330 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01304 Lapu-Chr3 14252848 14255282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01304 109 363 Trehalose Biosynthesis Gene Families AT1G23870 26.429 2.27e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01304 K01087 - zju:107430298 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01304 3 14252848 14255282 Lapu3g01304 3 14252848 14255282 ECH