Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu3g01300 | ATGTCATCCTCTTCCACCACATTATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAATATTTGTGACACCGTCCTCGCTGTAAGCGTTCCCTGCACAAGCTTGTTCAAGACCGTTACAGTCCGATGCGGCCATTGCACTAACCTCCTGCCAGTGAACATGCGCGGGCTGCTTGTGCCGTCTCCCTCTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCGTCCCATAACCTCCTGGAGGAGATACCAAACCCCTCTCCAAATTTTCTTATGAACCAAACAAATTTAAGTGCTTCAAACGAGTTCTCTATGCCTTCTAGGACTGCAGCTGATGAGCTTCCCCGGCCACCGATCATAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCGTACAACCGCTTTATCAAGGACGAGATCCAACGCATCAAATCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGAAGAGGTTCTCATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTCTCACCCTACTAA | 648 | 0.4923 | MSSSSTTLSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLVPSPSQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQTNLSASNEFSMPSRTAADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY* | 216 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu3g01300 | 215 | Gene3D | High mobility group box domain | 124 | 187 | IPR036910 | - | |
Lapu3g01300 | 215 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 189 | IPR006780 | GO:0007275 | |
Lapu3g01300 | 215 | SUPERFAMILY | HMG-box | 123 | 172 | IPR036910 | - | |
Lapu3g01300 | 215 | CDD | HMG-box_SF | 133 | 169 | - | - | |
Lapu3g01300 | 215 | FunFam | Axial regulator YABBY | 124 | 195 | - | - | |
Lapu3g01300 | 215 | Pfam | YABBY protein | 15 | 179 | IPR006780 | GO:0007275 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu3g01300 | Lapu-Chr3 | 14185793 | 14190414 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu3g01300 | 26 | 213 | C2C2-YABBY Transcription Factor Family | AT4G00180 | 59.809 | 1.75e-63 | 194 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-YABBY | Lapu3g01300 | YABBY | 7.8e-71 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu3g01300 | K25796 | - | gmx:100798441 | 429.483 |