Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01286 ATGGATCCAATCACATCACGTGGTCACTCTCTTCCCCCTCCTTTTAACGCAAGGGATCTCCATCTGCACCACCAGCCGCAACAGCACCAATTCCAAACCTTAAACCAAGGTACCGATGACGAGCACAGCGGAAGCAGCAGCGCGCAGAAGAGGGAACGTGAAGAGAACAACGGCAACAACAACGATGAAGCAGGTGAGGCTGAGATAACAAGGAGACCTCGCGGGAGACCAGCTGGATCCAAAAACAAACCGAAGCCGCCCATTATCATCGCTCGCGACAGCGCAAACGCCATGAGAACCCACATGATGGAGGTGGCAGACGGGTGCGACATCGTGGAAAGCGTGTCTGAGTTCGCGAGGAAACGCCAGAGAGGGGTTTGCATCCTGAGTGGCACTGGCACAGTCACCAACGTCACTCTCAGGCAACCGGCTTCTTCCGGTGCGGTTGTCACTCTCCATGGAAGGTTTGAGATTTTGTCCCTCAACGGATCGTTCCTTCCTCCGCCTGCGCCACCGGCTGCTTCCGGTTTGACCATTTATTTGGCGGGTGGCCAGGGACAGGTGGTGGGAGGGAGTGTGGTTGGGACACTGCTTGCTTCTGGGCCTGTGGTGATCATGTCTGCTTCATTCAGCAACGCTGCTTATGAGAGGCTTCCTTTGGAGGATGAAGACCCTTCGCTGCCAATGCAAGGAGGTTCAATTGGGTCACCCGGTGCAAGTGGTGTTGGTCAGTCACAGCTTCTAGGAGGAGGAGATGCAACTGCTCCACTTTTCCATGGTTTGCCTCCTAATCTTCTCAATTCTGTTCAAATGCAATCTGAGCAATTTTGGGCATCCAGTCGCCCACCCTTCTAG 855 0.545 MDPITSRGHSLPPPFNARDLHLHHQPQQHQFQTLNQGTDDEHSGSSSAQKREREENNGNNNDEAGEAEITRRPRGRPAGSKNKPKPPIIIARDSANAMRTHMMEVADGCDIVESVSEFARKRQRGVCILSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLNGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLLASGPVVIMSASFSNAAYERLPLEDEDPSLPMQGGSIGSPGASGVGQSQLLGGGDATAPLFHGLPPNLLNSVQMQSEQFWASSRPPF* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01286 284 PIRSF ESCAROLA 15 284 IPR014476 GO:0003680
Lapu3g01286 284 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Lapu3g01286 284 CDD DUF296 99 166 IPR005175 -
Lapu3g01286 284 MobiDBLite consensus disorder prediction 26 43 - -
Lapu3g01286 284 MobiDBLite consensus disorder prediction 222 242 - -
Lapu3g01286 284 FunFam AT-hook motif nuclear-localized protein 98 225 - -
Lapu3g01286 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 278 IPR014476 GO:0003680
Lapu3g01286 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Lapu3g01286 284 MobiDBLite consensus disorder prediction 44 75 - -
Lapu3g01286 284 MobiDBLite consensus disorder prediction 1 89 - -
Lapu3g01286 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 226 - -
Lapu3g01286 284 Gene3D - 98 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01286 Lapu-Chr3 13989027 13989881 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01286 1 284 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 53.313 2.98e-83 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01286 - - gmx:100807581 442.58