Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01283 ATGGAGTCCAGTGGTGGTGTTAGCGGCGGCGTTACGGTGGTGGGATCGGATGCTCCGTCCGATTACCATGTAGCTCCAAGGACCGACAACCCAGCTCCTGCAAGCGGATCCGCAACACAAACTCCGGCGACCGTGGTGAGTGTTCCGCCACCTCATCCACCGCACACGGCAGCGATGGAGGCGTTGCCCGCAACGTTGCCAGCTAAAAAGAAGAGGGGCCGGCCGAGAAAGTACGCACCAGATGGGTCGGTGACCATGGCACTGTCTCCAAAGCCAATATCTTCCTCCGCTCCGTTGCCGCCGGTAATTGATTTCTCGTCGTCGGAGAAGCGCGGAAAAATAAGACCAACTAGTTCAGTGAGCAAAGCCAAATTTGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTCACTCCCCACATCATCACTGTTAATTCTGGGGAGGATGTTACTATGAAGGTAATATCGTTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCTAATGGTGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACATTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCTGGCTCATTCATGCCCAATGAAAGTGGAGGAACACGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCAAGCCCTGATGGACGTGTTGTAGGTGGAGGAGTAGCTGGTTTATTGGTTGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAACATGAACAGAAGCCAAGAAAACAGAAACACGAAGTTATATCAAGTGTGACCCCAGCTGCAATTGTTCCCATCTCGACTCTTGATCCAATACCAATTCTATCATCAGCAACTTCCATCCGCGGAGAAAGTTGGTCTGCTATGCCAGCAGAGGCCAAGAATAAACCAACTGACATTAACGTGTCCCTTCCAGCAGGACATTGTGTCATGAAGAACACTTTGATGTCATAG 1014 0.5 MESSGGVSGGVTVVGSDAPSDYHVAPRTDNPAPASGSATQTPATVVSVPPPHPPHTAAMEALPATLPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSSEKRGKIRPTSSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISSVTPAAIVPISTLDPIPILSSATSIRGESWSAMPAEAKNKPTDINVSLPAGHCVMKNTLMS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01283 337 ProSiteProfiles PPC domain profile profile. 139 281 IPR005175 -
Lapu3g01283 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 38 280 IPR039605 GO:0003680
Lapu3g01283 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 260 - -
Lapu3g01283 337 CDD DUF296 143 234 IPR005175 -
Lapu3g01283 337 MobiDBLite consensus disorder prediction 1 93 - -
Lapu3g01283 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 257 IPR005175 -
Lapu3g01283 337 Gene3D - 144 276 - -
Lapu3g01283 337 FunFam AT-hook motif nuclear-localized protein 1-like 144 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01283 Lapu-Chr3 13917849 13922512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01283 1 324 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 62.147 1.90e-133 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01283 - - gmx:100801730 550.051