Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01257 ATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAACGAATCCAGTAGGCAAGTCACCTTCTCCAAGAGAAGGAACGGCTTGCTTAAGAAGGCCTTTGAGCTTTCCGTACTGTGCGATGCTGAAGTCGCACTCATCATCTTCTCTACCAGAGGGAGGCTTTACGAGTTCTCCAGTTCAACATCAAGTATAAACAAAACAATTGAACGCTATCAAATGAAAATGAAGGACCTTGGTGTCAGCAACAAAGGAATCCACGAAAATACACAGCTTCTAAAGGACGGTGGTATGAGCATGGAAAAGAAAATCGAGCACCTAGAAAATTCCAGAAGGAAGCTTTTGGGAGATGAATTGGATACATGCGGTACTGACGAGTTACGACAGCTAGAGAACCAACTCGAACGCAGCCTGGAAAAAATTAGGGCAAGAAAGAATCAATTGTTCCAGGAGCGAATTGAGAAGCTAAAAAAAGAGGAAAAGTGCTTACTCGAAGTAAATAAACGCTTACGCGAGCAGTACCTGATGGAACAACAACGTTCTTTGAGTGATGAGGATTTGGAAGTTGTCACAGAAAAGAGAGAAGAGGTGGAGACGGAGTTGTTCATAGGAAGACCAGAGAAACGAATGACGTTGAAGTTGAAACCTGCAAACCGTGACAATGATCATAAATACCCAAGTAATCTACATTGA 690 0.4304 MVRGKTQMKRIENESSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSSTSSINKTIERYQMKMKDLGVSNKGIHENTQLLKDGGMSMEKKIEHLENSRRKLLGDELDTCGTDELRQLENQLERSLEKIRARKNQLFQERIEKLKKEEKCLLEVNKRLREQYLMEQQRSLSDEDLEVVTEKREEVETELFIGRPEKRMTLKLKPANRDNDHKYPSNLH* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01257 229 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Lapu3g01257 229 FunFam Agamous-like MADS-box protein AGL13 13 81 - -
Lapu3g01257 229 Pfam K-box region 92 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu3g01257 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 172 - -
Lapu3g01257 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu3g01257 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu3g01257 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu3g01257 229 ProSiteProfiles K-box domain profile. 89 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu3g01257 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu3g01257 229 Coils Coil 123 172 - -
Lapu3g01257 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu3g01257 229 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Lapu3g01257 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lapu3g01257 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu3g01257 229 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01257 Lapu-Chr3 13603860 13622393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01257 1 217 MADS-box Gene Family AT4G22950 57.658 1.08e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu3g01257 K-box 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01257 - - vum:124828919 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01257 3 13603860 13622393 Lapu3g01257 3 13603860 13622393 ECH