Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01256 ATGCAAGAAGCAGGGTTGGGAATGAATATGTTGAGCGCAGAAGTCTCAGCGGCCGCCGAACACCACCACCACCGTCAAGTGAAGGCTGAGATAGCCACCCACCCACTTTACGAACAGCTTCTGGCTGCACACGTCTCGTGCCTCCGCGTCGCCACACCCATCGACCACTTGCCACTCATCGACGCTCAGTTATCGCACTTCAACAATCTCCTCCGCTCTTACGCCTCACACCATTCCCATTCCCATGACCGACAAGAACTCGACAACTTCATGGCACAATATTTGATTGTGTTGTGTACGTTGAAAGAGCAGCTTCAGCAACATGTGAGGGTGCATGCCGTTGAGGCTGTGATGGCTTGCCGTGATATTGAAAGTACCTTGCAAGCTCTAACAGGAGTGAGCTTGGGAGAAGGATCAGGTGCAACAATGTCAGATGATGAAGAGGATTTTCAAATGGATGGGTCTTTAGATCAGTCTAGCGGTGAGGGGCATGACATGATGGGATTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCCCTCATGGAAAGAGTTCGTCAAGAGCTTAAGATTGAGCTCAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTAAGGAAACGGAGAGCTGGGAAATTACCTGGTGACACAACATCGGTTTTAAAGGCATGGTGGCAGCAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAATCAAAGGAAACGCAATTGGCACAGCAATTCTCAATCGGTCACCTCTCTGAAGTCCAAGCGCAAGAGGGATTATTCTCACTAA 870 0.4828 MQEAGLGMNMLSAEVSAAAEHHHHRQVKAEIATHPLYEQLLAAHVSCLRVATPIDHLPLIDAQLSHFNNLLRSYASHHSHSHDRQELDNFMAQYLIVLCTLKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGSGATMSDDEEDFQMDGSLDQSSGEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRDYSH* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01256 289 Gene3D - 207 282 - -
Lapu3g01256 289 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Lapu3g01256 289 Pfam KNOX1 domain 27 67 IPR005540 GO:0003677|GO:0005634
Lapu3g01256 289 Pfam Homeobox KN domain 228 267 IPR008422 GO:0003677|GO:0006355
Lapu3g01256 289 SMART KNOX2_2 77 132 IPR005541 GO:0003677|GO:0005634
Lapu3g01256 289 ProSiteProfiles ELK domain profile. 188 208 IPR005539 GO:0003677
Lapu3g01256 289 CDD homeodomain 211 272 IPR001356 GO:0003677
Lapu3g01256 289 ProSiteProfiles 'Homeobox' domain profile. 208 271 IPR001356 GO:0003677
Lapu3g01256 289 SUPERFAMILY Homeodomain-like 210 275 IPR009057 -
Lapu3g01256 289 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 47 273 - -
Lapu3g01256 289 Pfam KNOX2 domain 81 131 IPR005541 GO:0003677|GO:0005634
Lapu3g01256 289 FunFam homeobox protein knotted-1-like 3 isoform X1 209 270 - -
Lapu3g01256 289 SMART HOX_1 210 275 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01256 Lapu-Chr3 13581990 13589845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01256 1 284 Homeobox Transcription Factor Family AT1G62990 75.862 1.92e-161 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lapu3g01256 KNOX2 8.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01256 - - gmx:100803130 535.028