Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01249 ATGAACATTCTCGGACCATCATCTCACGAGTCCACCAACGGCTGCTACTCTTGCACCTCCCCCGAAACAAGCTCCTCTAACCCTCCCAACGCCGTTCACTCCGACGAGGAACTACATGCATTAGCGTCGGCACGCCCCAAGAAACGTGCGGGCCGCCGAATCTTTAAGGAGACACGCCACCCCGTCTACCGAGGAGTGCGTCAGAGGAACAACAACAAGTGGGTCTGCGAGGTGCGTATCCCCAATGACAAGTCCACTAGGATTTGGCTCGGAACTTACCCAACCCCTGAGATGGCTGCACGTGCTCACGACGTTGCTGCGCTCGCTCTCCGAGGCAAGTCCGCTTGTCTCAACTTCGCCGACTCGGCGTGGCGTCTGCCCTTGCCAGCGTCGACAAATGCTAAGGAGATACGGCGAGTGGCGGCGGCTGCTGTTGTGGCGATTGCCGCGGAAGACAGTTGCATGGAGCAATTAGAGAATGTGAATGTGGATGCCGTGGCTGATTGCGAAGTTAGCTGCAGTGATGTCAGGGTTGATGAAGATGCCAATAGAAGCAAAGCCTTGCGGGAGTTTTGTGATTTGGAAGAAATAAGTATGCCAGATGCATCAGTATTTGAAGACATGCATAAGTGGCTTCAGAGTATGGCGGATGAGCCTTTGCGATCGCCTACTTTTGTAACATATGTTAGGGACTGGAGCTGTGTTGAGGATGATGCTGAAATTTGGAAGAACTCATCTATGTTCATCAAGGCCTATATTCCTGATTGCAAAATTAGATGA 780 0.5231 MNILGPSSHESTNGCYSCTSPETSSSNPPNAVHSDEELHALASARPKKRAGRRIFKETRHPVYRGVRQRNNNKWVCEVRIPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPASTNAKEIRRVAAAAVVAIAAEDSCMEQLENVNVDAVADCEVSCSDVRVDEDANRSKALREFCDLEEISMPDASVFEDMHKWLQSMADEPLRSPTFVTYVRDWSCVEDDAEIWKNSSMFIKAYIPDCKIR* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01249 259 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Lapu3g01249 259 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Lapu3g01249 259 SUPERFAMILY DNA-binding domain 62 122 IPR016177 GO:0003677
Lapu3g01249 259 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Lapu3g01249 259 MobiDBLite consensus disorder prediction 1 33 - -
Lapu3g01249 259 MobiDBLite consensus disorder prediction 1 32 - -
Lapu3g01249 259 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Lapu3g01249 259 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Lapu3g01249 259 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 242 IPR045277 GO:0003700
Lapu3g01249 259 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
Lapu3g01249 259 FunFam Ethylene-responsive transcription factor 2 61 121 - -
Lapu3g01249 259 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01249 Lapu-Chr3 13483427 13485326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01249 41 153 AP2-EREBP Transcription Factor Family AT5G51990 71.681 1.19e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g01249 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01249 - - pvu:PHAVU_003G212800g 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01249 3 13483427 13485326 Lapu3g01249 3 13483427 13485326 ECH