Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01248 ATGGCTTCATCATCATCTTCTTCCAAGAGACATCCACTGTACCATGGAATCCGCTGCCGCGGTGGAAAATGGGTCACTGAAATCCGTGAGCCACGTAAAACCAACCGCATATGGCTAGGCACGTTTCTCACGCCGGAGATGGCCGCCGCAGCCTACGACGTGGCGGCGTTGGCCCTGAAAGGCGGCGAAGCGGTTCTCAACTTCCCGGATTCAATTGGCAAGTATCCAGTTCCCGCGTCCAAATCCCCTGCGGACATCCGCACCGCTGCCATTGCTGCAGCCGAACTCATGAACCCTGAAGCCAGCCACAACAACGTTAATGAAGTAGCTCAGCCTGACAACACAGAGGGTGGTGGTTACGATGATAATGTTGCTGTTCCTTGGAATGAAACTGAGTTTGTCGACGAGGAAGCCATATTCTCCATGCCGAGTTTGTTGGTCGACATGGCTGAGGGAATGTTGCTAACCCCTCCCAGAATGAGCTCACCCTCTGATTACTGGACTGAAAATTCCGCTGGAGAAAATTTGTGGAACTTTTGA 540 0.5259 MASSSSSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGEAVLNFPDSIGKYPVPASKSPADIRTAAIAAAELMNPEASHNNVNEVAQPDNTEGGGYDDNVAVPWNETEFVDEEAIFSMPSLLVDMAEGMLLTPPRMSSPSDYWTENSAGENLWNF* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01248 179 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Lapu3g01248 179 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Lapu3g01248 179 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Lapu3g01248 179 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Lapu3g01248 179 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 178 IPR045277 GO:0003700
Lapu3g01248 179 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Lapu3g01248 179 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01248 Lapu-Chr3 13457864 13458403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01248 8 179 AP2-EREBP Transcription Factor Family AT5G52020 53.409 9.95e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g01248 AP2 2.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01248 - - vra:106768065 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01248 3 13457864 13458403 Lapu3g01248 3 13457864 13458403 ECH
Lapu3g01248 3 13457864 13458403 Lapu3g01248 3 13457864 13458403 PCT