Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01225 ATGGTTTCGACGAGACGGAGTGGATCTCTCTCTGCCAACAACTCCAAAAGATCTTCCTCATCGGAAAATAAGCCTCCTTCGCCCAAGCGTCAAAAGGTCGACAATGGCGCTTCGTCGGAGAAACCGGTGCCGACACCGGCGGAGAATTCAAAGGATTTATGTACTCCGGAGCCAGTGCCTGATCCCGGGGAATGTGGCTCCGGCGACGTTCAGATCGCCGGAGCGGGTTCCGCCGATGGAGTGAGCTCAGGCAAGGGTGACGCTACGCCGGCTGTGCCTGTCACGGCGCCGATTGCTGATGCCGCATGTCCGTCCTTCTCTTCGTGGAGTGTATATCAGAAACAGATTCCGAATATCGAGGGAGGACCGTGGTGCAGGTTCTTGTCTCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCATACCCAATTTCACGATTGGTTCTAATAGAAGTTGCAACTTTGCACTGAAGGATCAAACTATAAGTGGAAATTTATGCAAGATCAAGCACACGCAGCGTGACGGAAGTGCTGTAGCTGTGCTAGAAAGTACGGGCAACAAAGGATCTGTGTTAGTAAATGGGACTCATGTCAAGAAGAATACCAGCCGTGTGCTTAACTCGGGTGATGAAGTGGTTTTTGGTGTTCTTGGAAATCATTCTTATATTTTCCAGCAACTAAATAGTGAGGTTGCAATTAGGGGTGCAGAAGTTCCAACTGGTGTTGGGAAATTTCTGCCGCTTGAAAGGAAAAGTGGAGACCCTTCAGCTGTGGCCGGTGCCTCTATTTTGGCTTCTCTTTCCATCAAACAGGATCTTACAAGATGGAAATCTCCAACTCATACCTCTAGTAAACCTCACCAGGGTACTGATGTCTCTAGTCATCCTGTCCATCATGATAGTACAGAAATTGAGCTTGATGGCTCAGAGTCAACTCCAAATGTGCATACTGATAAAGCAGCAGATGCTCAAACAAATGAGAGGAATTCAACAATGGATTGCAATCCGGATGCTGGAGCAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCGACCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTGGAAGAAAAAAATGGGACGCTGGACATGCAGACTGCATCGACTTTGGGTACATCTGTGCGCTGTGCTGTGTTTAAAGAAGATGTTCACGCTGCTGTACTGGATGGAAAAGAAATAGATGTTTCTTTTGACAACTTCCCTTACTATTTAAGTGAGAGCACAAAAAATGTCTTGGTGGCTGCTTGCTTTATGCACCTAAGGCATAAAGAACATGAAAAGTTTACTACAGATCTTACAACCATAAACCCTCGTATTCTGCTCTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAAGCACTAGCAAAATACTTTGGAGCTAAGCTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGATTAAATGCTGAAAAATCATTCAGCACTAAACAAAGTCCTACAGCGACAAAAATGGCCGGGAGCGTGGATCCACCTGCTATTGAAACAGAGACACCTAGCTCTTCAAATGCACCTTCATTGGGCTTTGACTCTCAGCCTAAATTGGAAACTGATAACATCCCATCCACCTCTGGGACAGCTAAAAGTTGCTTGTTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGCGTGTATCAAACATCATCAAGGGGACCGTCTAATGGAGGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCCTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCATGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACTGATCTTCGCTTGGAAAGCAGTGCTGTAGAAGAACTGGACAAATTACTTATTCATTCATTGTTTGAGGTTGTTTTTAGTGAGAGTAGAAGTGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAACGGAGATTCATATGCATTTAAAAGTAAGCTTGAAAATCTTCCAGACAACGTCGTCGTAATAGGTTCTCACACTCAAAATGACAGTCGTAAGGAGAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCTGATAGTTTTGGACGATTGCATGACAGAGGGAAGGAGGTTCCAAAACCAAATAGAACTTTGACTAAGCTCTTCCCAAATAAAATTATAATTCACATGCCGCAGGATGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTGGAGCGAGATGTTGAGACTCTCAAAATCAAAGGAAATTTACATCACTTGCGAGCAGTGAGTGCCTTGTGTGTTGCTTGTAAATTTAATTTATTTAGCGTAATTGTAAGGCTTTTGTATCATCATACCTGCATATTTTGTGTGAAAAATAGAGTCGGAGGCAAGATTCGTTCATCCTATTATTTCATTATGATACTAAGTAACTCAAAGTTTTGGGACGATGTGGAATGGAATGTGAAGGGCTTGAGACATTGTGTATTAAGGACCAGACACTCACAAATGAAAGTATATGCAGAGAAGATAATTGGTTGGGCTTTAAGTCACCACCTTATGCAGAATTCAGAAGCTAAGCCTGATTCGAAGCTTGTATTGTCGTGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCTGTCCAGAATGAGTCCAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTGACGGAAAATGAATTTGAAAAGAGGCTTTTGGCTGACGTTATTCCACCTAGTGACATTGATGTTACCTTTGATGATATTGGAGCTCTTGAAAAGGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCTGACCTTTTTTGCAAGGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAAACAATGCTTGCAAAGGCAATTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGGGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTCGCGAGTAAAATTTCTCCTAGTGTTATATTTGTCGATGAGGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGAACGAAGGAAACAGAGAGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTAGATGAAGCTGTTATAAGGAGGATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCGCCTAACAGAGCAAAAATATTGAAAGTCATTCTGGCCAAAGAGGAATTGTCTCCTGATGTTGATTTGGATGCAGTTGCTACTATGACCGATGGATATTCTGGAAGTGATCTTAAGAATTTATGTGTTACTGCAGCACATCGGCCTATCAAAGAGATATTAGAAAAGGAAAAAAAGGAACGTGTCACTGCTCTAGCAGAAGGTCAACCAGCTCCTGCGTTATGTAGCAGTGGGGACATCAGATCATTAAACATGGAAGACTTCAAATATGCTCATCAACAGGTTTGTGCAAGTGTTTCTTCTGAATCAGTAAACATGACTGAGCTTTTACAATGGAATGAACTATACGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTAA 3837 0.4295 MVSTRRSGSLSANNSKRSSSSENKPPSPKRQKVDNGASSEKPVPTPAENSKDLCTPEPVPDPGECGSGDVQIAGAGSADGVSSGKGDATPAVPVTAPIADAACPSFSSWSVYQKQIPNIEGGPWCRFLSQSAQNPNVAVCIPNFTIGSNRSCNFALKDQTISGNLCKIKHTQRDGSAVAVLESTGNKGSVLVNGTHVKKNTSRVLNSGDEVVFGVLGNHSYIFQQLNSEVAIRGAEVPTGVGKFLPLERKSGDPSAVAGASILASLSIKQDLTRWKSPTHTSSKPHQGTDVSSHPVHHDSTEIELDGSESTPNVHTDKAADAQTNERNSTMDCNPDAGAEAGNVKLSGVNDFLRPFFRILARPSCKLKLSKSICKQVLEEKNGTLDMQTASTLGTSVRCAVFKEDVHAAVLDGKEIDVSFDNFPYYLSESTKNVLVAACFMHLRHKEHEKFTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKSFSTKQSPTATKMAGSVDPPAIETETPSSSNAPSLGFDSQPKLETDNIPSTSGTAKSCLFKLGDRVKFSCSSSCGVYQTSSRGPSNGGRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRSAPFILFMKDAEKSIVGNGDSYAFKSKLENLPDNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNRTLTKLFPNKIIIHMPQDEALLASWKQQLERDVETLKIKGNLHHLRAVSALCVACKFNLFSVIVRLLYHHTCIFCVKNRVGGKIRSSYYFIMILSNSKFWDDVEWNVKGLRHCVLRTRHSQMKVYAEKIIGWALSHHLMQNSEAKPDSKLVLSCESIQYGIGILQSVQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPDLFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVATMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERVTALAEGQPAPALCSSGDIRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM* 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01225 1278 SMART AAA_5 1010 1147 IPR003593 GO:0016887
Lapu3g01225 1278 MobiDBLite consensus disorder prediction 274 290 - -
Lapu3g01225 1278 Gene3D - 1146 1240 - -
Lapu3g01225 1278 Coils Coil 934 954 - -
Lapu3g01225 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 972 1253 IPR027417 -
Lapu3g01225 1278 CDD RecA-like_ATAD1 977 1143 - -
Lapu3g01225 1278 Gene3D - 972 1253 IPR027417 -
Lapu3g01225 1278 MobiDBLite consensus disorder prediction 520 569 - -
Lapu3g01225 1278 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 972 1148 - -
Lapu3g01225 1278 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 402 1277 - -
Lapu3g01225 1278 MobiDBLite consensus disorder prediction 1 88 - -
Lapu3g01225 1278 Pfam ATPase family associated with various cellular activities (AAA) 1014 1143 IPR003959 GO:0005524|GO:0016887
Lapu3g01225 1278 MobiDBLite consensus disorder prediction 1 26 - -
Lapu3g01225 1278 MobiDBLite consensus disorder prediction 274 336 - -
Lapu3g01225 1278 SUPERFAMILY SMAD/FHA domain 127 217 IPR008984 GO:0005515
Lapu3g01225 1278 ProSitePatterns AAA-protein family signature. 1117 1136 IPR003960 GO:0005524|GO:0016887
Lapu3g01225 1278 Pfam AAA+ lid domain 1167 1202 IPR041569 -
Lapu3g01225 1278 Gene3D - 123 231 - -
Lapu3g01225 1278 Pfam FHA domain 145 214 IPR000253 GO:0005515
Lapu3g01225 1278 MobiDBLite consensus disorder prediction 539 569 - -
Lapu3g01225 1278 MobiDBLite consensus disorder prediction 306 332 - -
Lapu3g01225 1278 MobiDBLite consensus disorder prediction 291 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01225 Lapu-Chr3 13168822 13181324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01225 973 1205 Calmodulin-binding Proteins AT3G56690 40.928 3.79e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01225 - - gmx:100816731 2089.31