Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01223 ATGGATATGGTCATAGAGGTTGTCTCCGGTGCGCACTTCTCCGGTTGGCATCCTTCAACGACGTCGTCTTCTTCTCCGGCATCCTCTCATCATCCCTTCATAATCGGTGTCTCTGGAGGCACTGCATCGGGGAAAACAACAGTATGTGACATTATCGTTCAGCAACTGCAAGATCACAGAGTTGTGCTCCTCTGTCAGGATTCATTCTACCGCGGTTTGACGAATGATGAGTTGAAACGCGTTCATGAGTATAACTTTGATCATCCTAATGCATTTGACACAGAGCAACTTGTAGAAACCCTCGGTCAGCTCAAATCTGGACAGTCGGTTCAGATTCCAATATACGATTTCAAGCTTCATCAGAGATGTACCGACAGATCTCGACAGGTCAATGGATCTGATGTAATCATTATGGAGGGTATACTGGTTTTTCATGAACAACGTGTCCGCAACATGATGAATATGAAGATATTTGTTGATGCAGATCCAGATGTAAGGCTTGCCCGCAGAATAAAACGTGATACAGTTGAGAGGGGTAGAGATGTACGATCGGTACTGGAACAGGCAAGACTTGTTATCTTCATTCTTTACAATATATTAACTTCATATGCAAAATTTGTTAAGCCTGCCTATGAAGATTTTATTCTTCCATCAAAAAAATATGCTGACATCATCATACCTCGCGGTGGAGAGAATCGTGTAGCAATTGACTTGATTGTTCAACATATTCGCACTAAGCTGGGTCAACATAACCTCTGCAAGATATATCCGAATTTGAATGTTATACAATCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGATAGGGACATATCAAAGCATGATTTTGTTTTTTATTCAGATCGGCTAATTCGTTTGGTAGTAGAACATGGTCTTGGTTACTTGCCATTTACAGAGAAACAAGTTATCACACCTACAGGCTCAATTTATACTGGAGTTGATTTTTGTAAGAAATTGTGCGGAGTATCCATTGTTCGAAGTGGCGAAAGTATGGAAAATGCTTTGCGTGCTTGCTGTAAAGGAATAAAGATCGGAAAAATTCTCATTCACCGCGATGGTGATGAAACCCAGCTTATTTATGAGAAGCTTCCTAAAGATATTTCGGAGAGACATGTTCTTCTCATGGACCCAGTACTTGGTACAGGTAACACCGCCAGCGAAGCAATCGAGCTTCTTATAAAGAAGGGAGTTCCAGAGTCCCAGATAATATTCCTTAACCTCATTTCTGCTCCTGAGGGCGTACAATGTGTATGTAAACGTTTTCCGCATCTGAAAATTGTCACATCGGAGATTGAAGAAGGATTAAATGACCAGTTCCGGGTCATACCAGGGTTGGGAGAATTTGGAGATCGCTACTTTGGTACGGACGATTCTTAG 1404 0.4174 MDMVIEVVSGAHFSGWHPSTTSSSSPASSHHPFIIGVSGGTASGKTTVCDIIVQQLQDHRVVLLCQDSFYRGLTNDELKRVHEYNFDHPNAFDTEQLVETLGQLKSGQSVQIPIYDFKLHQRCTDRSRQVNGSDVIIMEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIKRDTVERGRDVRSVLEQARLVIFILYNILTSYAKFVKPAYEDFILPSKKYADIIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDETQLIYEKLPKDISERHVLLMDPVLGTGNTASEAIELLIKKGVPESQIIFLNLISAPEGVQCVCKRFPHLKIVTSEIEEGLNDQFRVIPGLGEFGDRYFGTDDS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01223 467 PRINTS Uridine kinase signature 178 189 - -
Lapu3g01223 467 PRINTS Uridine kinase signature 164 174 - -
Lapu3g01223 467 PRINTS Uridine kinase signature 62 73 - -
Lapu3g01223 467 PRINTS Uridine kinase signature 107 122 - -
Lapu3g01223 467 PRINTS Uridine kinase signature 32 49 - -
Lapu3g01223 467 FunFam Uridine kinase 250 464 - -
Lapu3g01223 467 CDD PRTases_typeI 323 437 IPR000836 -
Lapu3g01223 467 CDD UMPK 34 246 IPR000764 -
Lapu3g01223 467 FunFam Uridine kinase 29 249 - -
Lapu3g01223 467 Pfam Uracil phosphoribosyltransferase 264 464 - -
Lapu3g01223 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 239 IPR027417 -
Lapu3g01223 467 NCBIfam uridine kinase 32 246 IPR000764 -
Lapu3g01223 467 Gene3D - 28 249 IPR027417 -
Lapu3g01223 467 Pfam Phosphoribulokinase / Uridine kinase family 34 234 IPR006083 GO:0005524|GO:0016301
Lapu3g01223 467 Gene3D - 250 464 IPR029057 -
Lapu3g01223 467 SUPERFAMILY PRTase-like 249 465 IPR029057 -
Lapu3g01223 467 PANTHER URIDINE KINASE 26 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01223 Lapu-Chr3 13150126 13156252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01223 1 466 PRT Gene Family AT3G27190 72.449 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01223 K00876 - gmx:100816209 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01223 3 13150126 13156252 Lapu3g01223 3 13150126 13156252 ECH