Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01217 ATGGCCTCTTGCACTTCTCTTTCCCTTTGTCCTCACACCTTCTGTTGCCGCCACCGCCCTTACCCTACCCGCCTTTCCCTTTCTTGCTCTCTCTCCTCCTCTTCCCTCCCTGATACGGATGGACCTAAAGTACTGCGTAAAAGATCGAGAAGGGTAGAAGGTCCCAGAAAAAGCATGGAAGATTCTGTTCAACGCAAGATGGAGGAATTTTATGAAGGACGTGATGGGCCACCCCTTAGAGTCCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAACTATGATCGCTATATCCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTTCAGAAGATCATACCTGATACAACGTTTATAAGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCAGCATTAGATTCTCATACACCAATTTTTGCGTCATCCTTTACAATGGAGCTTATTAGGAAGCGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTTAAAGTTTTTAGAACGAGGAAAAAGTTTACGGCTGGGCCATTTGAAATAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGCCTAGTGCTCCGATGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAAATCCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACGTTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACTACCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGAATATTTCAGCTGCTAAAGGACGTGTTATAACAACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCGCTAAGAACATATCTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCAACTCTGGTGAAAGCGGAGGATATTGATGCTTATGCACCAAAGGATTTGTTAATTGTTACGACGGGCTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCATATGGAAGTAGTCATGCTTTCAAGCTGACAAAGGAGGATATCGTGTTGTATTCAGCCAAGGTTATACCTGGCAATGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGATATTGGATCAACTATAATTATGGGGAAGAATGAATGTTTGCACACATCTGGTCATGGGTATCGGGGAGAATTGGAGGAAGTACTTAGAATTGTGAAGCCACAGCACTTTCTACCCATACATGGAGAACTCTTGTTCTTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTCGGCACACAACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCATTTGAGAAACAGAAGAGTCCTTTCCAATGGTTTCATGTCACTTGGAAAAGAGAATTTCCAGTTGATGTATAGTGATGGCGAGAAAGCATTCGGTACATCAAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATAGTTGTTAGCATGGAAATATTTCGCCCACAAAATTTAGACAGTCCGGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACCACAAGATGCCTGTGGCTTGACAAGGGGAAGCTGTTGGATGCACTCCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGCGAGCTGTCCACTGGCTCACATGGAAAGAATTGTGTCTGAGGTGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAACGACCTGAAGTTATTGTCGTTGCTGTAGAAAATCCTGCAGCTGTTCTTGCTAATGAGATAAACATGAAGCTGTCTGGAAAATTTCATGTGGATGGGACATCGACATTGAGAAAGGTGGTGGATGGACATGGGAAAGAAAATCAGAGAACCAAAACGCAAATAAGAGATCAAATTATTGTAGGTGGTATACTGCCTACTGAAGACATTGCTATCTCAAGTGGCGTTGAGGATGACTTGTCTGATGCGGGTGTTTCAGATGATTTTTTTAAACCACTTGTTGGATCCTCTCCAGCTGAGAAGTCAATTAAAGCTAACAATGGTTATGTTCCACAAAAGGAGAAGTCATCCCCATTGAAGGATGGTAGTTCTGAAGACACTGAAGAATGCAATTCTGTAAATACATCAAATTCTGAACCTAAATCTTCAAAATCAGCAAAGAGAAATAAATGGAAACATGATGAAGTTAAGAAGCTGATTGGTATGCGTGGGGAACTGAATGACCGATTTCAAGTTGTGAAAGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGTCTAATGGGATCAGTAGAACTCCTGGGCAGTGTAAATCTCTGTGGACATCTTTGTTACAGAAATACGAGCAGGAGGTGAAGAATGAGAAGAATAGCAAGAAGAAATGGCCGTATCTTGAAGAAATGGAAAGAATTCTGTCTGACAGCGAGGCACTGGCATCTAAATGA 2610 0.4188 MASCTSLSLCPHTFCCRHRPYPTRLSLSCSLSSSSLPDTDGPKVLRKRSRRVEGPRKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFTAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDENPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDIVLYSAKVIPGNESRVMEMLNRISDIGSTIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFMSLGKENFQLMYSDGEKAFGTSSELFIDERMRIALDGIIVVSMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPASCPLAHMERIVSEVLRKMVRKYSGKRPEVIVVAVENPAAVLANEINMKLSGKFHVDGTSTLRKVVDGHGKENQRTKTQIRDQIIVGGILPTEDIAISSGVEDDLSDAGVSDDFFKPLVGSSPAEKSIKANNGYVPQKEKSSPLKDGSSEDTEECNSVNTSNSEPKSSKSAKRNKWKHDEVKKLIGMRGELNDRFQVVKGRMALWEEISQNLLSNGISRTPGQCKSLWTSLLQKYEQEVKNEKNSKKKWPYLEEMERILSDSEALASK* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01217 869 CDD GT1 775 837 - -
Lapu3g01217 869 MobiDBLite consensus disorder prediction 31 61 - -
Lapu3g01217 869 PANTHER RIBONUCLEASE J 1 869 - -
Lapu3g01217 869 Gene3D - 777 838 - -
Lapu3g01217 869 MobiDBLite consensus disorder prediction 727 776 - -
Lapu3g01217 869 Gene3D - 83 495 IPR036866 -
Lapu3g01217 869 MobiDBLite consensus disorder prediction 754 768 - -
Lapu3g01217 869 ProSiteProfiles Myb-like domain profile. 769 833 IPR001005 -
Lapu3g01217 869 SMART Lactamase_B_5a 91 288 IPR001279 -
Lapu3g01217 869 CDD RNaseJ_MBL-fold 82 493 - -
Lapu3g01217 869 Pfam Myb/SANT-like DNA-binding domain 774 859 IPR044822 -
Lapu3g01217 869 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 477 IPR011108 -
Lapu3g01217 869 Gene3D - 280 430 IPR042173 -
Lapu3g01217 869 Pfam Beta-lactamase superfamily domain 102 238 IPR001279 -
Lapu3g01217 869 MobiDBLite consensus disorder prediction 41 61 - -
Lapu3g01217 869 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 493 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01217 Lapu-Chr3 13092952 13106246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01217 776 861 Trihelix Transcription Factor Family AT2G38250 32.184 1.20e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lapu3g01217 Lactamase_B_2 5.4e-11 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01217 - - gmx:100814619 1570.83