LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g01214	ATGGCGGCAGGGCGAAAAAGTGTTTCCCTGAGAAGAGACTTTTGCAAATACAGTTCCACCAAGGAGTCTGATCACTATAAGAATGACTCTTTCGGCGTGGAAAAGGGTGGATCTTGCATCCATCACTTTGCTCGTTCCGATGTGCTTCGTGGTGGAAACGAAGAGAGAGAACAAGGTGAGATCTGTTTTGAAGATGGGGAATATGAGGGTGCCTCTGTTTTTCCACCACCACAGAAGAAAAGGAAGTTTTCTCCAATCGTATGGGACCTAGCAGAGAAGGAAGAAAGAATCTCGTCAAAGAGTAGGATCTCGGAGACTGTTGCTCTGTCTCCTCCTCGCGCATCTCTACTGAGCAGTCCTGGAGCTAGTGGTGTTGTTGATTCAGGTGGTGTTATGGAAGAATCTTTGCCAGATTCTCGAAGCTATAGACAAGATGTGGAAGAAGAGAATGATGTGCAAGAATGGACTATCACAAAGTCAAGATGGGCTTCTGATGATGGTCCCTCTCCCGGGGCCGATGATAAATTCAATCATGGCAAAGGGAGCTCCAGTCCTGAAATTGGTGAATTCCATGGCAGTGGATCTTCAGAGAGCACCGTCACTAGATCATCAGGAAGCACTGGAAGAGATCATTATCTGGGTCTTTCTACTGATGACGCTGAATTTGAAAAGGATTTCCATACGGACCCCATGGTGGATGTTGAGGAATCAAATGACGTTGGTGATTGTCCATCGGATTCTGAAGAGAGTGGTGGATTGATGCATGTGCAGAGAAATATAAATATGCTTCACAGTTGCAGAAGTGTGTGCGAGTTTGAGATGATTAAGAAAATAAATGAAGGAACTTATGGTGTTGTCTATAAAGCTAGGGATAAAAAAACTGGAGAATTAGTTGCATTGAAGAAGGTGAAGATGAATATAGAGAGGGATGGCTTTCCGATGTCATCCTTGAGGGAAATAAACATTCTTTTGTCTTTGAACCACCCCTCCATTGTGAATGTTAAAGAAGTAGTTGTAGATGATTTTGACGGTACTTTCATGGTAATGGAATACATGGAGTATGACCTCAAGGGGATGATGGAGGTTAAGAAACAGCCTTTTAGCATTAGTGAAATTAAATCCTTGGTAAAGCAACTTCTTGAAGGTGTCAAGTATCTCCATGATAACTGGGTTATCCATAGGGACTTGAAGTCATCAAACATTCTGCTGAACCATGATGGGGAGCTTAAAATATGCGACTTTGGGCTGTCAAGGCAGTATGGAAGCCCTCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGGGCACCTGAACTTTTGTTGGGTGCTAAAGAATACTCAACAGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCTGAGTTAATTGCCAAGGAGCCCCTGTTCAGGGGTAAAAGTGAACTTGAACAACTTCATCAGATTTTTCGAACCCTGGGTACACCTGATGAGAAAATTTGGCCAGGATTATCCAAATTACCTGGGGCTAAAGCAAAATTTGTCAAACAACCGTTTAATATGCTAAGGAAGAAGTTTCCAGCTGCATCATTTACTGGTTTGCCAGTTTTATCTGAGCTGGGATTTGACTTATTGAAGAAGCTTTTAACTTATGACCCCGAAGAGAGGATAACTGCAGAAGATGCTCTCCTTCATGATTGGTTCTATGAAGCCCCTCTTCCCAAATCTGATTTCAAGCCTATTTTTCCTTCTTGGAGGACAATTAGTAATTAA	1755	0.4274	MAAGRKSVSLRRDFCKYSSTKESDHYKNDSFGVEKGGSCIHHFARSDVLRGGNEEREQGEICFEDGEYEGASVFPPPQKKRKFSPIVWDLAEKEERISSKSRISETVALSPPRASLLSSPGASGVVDSGGVMEESLPDSRSYRQDVEEENDVQEWTITKSRWASDDGPSPGADDKFNHGKGSSSPEIGEFHGSGSSESTVTRSSGSTGRDHYLGLSTDDAEFEKDFHTDPMVDVEESNDVGDCPSDSEESGGLMHVQRNINMLHSCRSVCEFEMIKKINEGTYGVVYKARDKKTGELVALKKVKMNIERDGFPMSSLREINILLSLNHPSIVNVKEVVVDDFDGTFMVMEYMEYDLKGMMEVKKQPFSISEIKSLVKQLLEGVKYLHDNWVIHRDLKSSNILLNHDGELKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELIAKEPLFRGKSELEQLHQIFRTLGTPDEKIWPGLSKLPGAKAKFVKQPFNMLRKKFPAASFTGLPVLSELGFDLLKKLLTYDPEERITAEDALLHDWFYEAPLPKSDFKPIFPSWRTISN*	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g01214	584	CDD	STKc_CDC2L1	266	562	IPR045267	GO:0004674\|GO:0005524\|GO:0006468
	Lapu3g01214	584	MobiDBLite	consensus disorder prediction	138	155	-	-
	Lapu3g01214	584	MobiDBLite	consensus disorder prediction	188	211	-	-
	Lapu3g01214	584	SMART	serkin_6	272	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g01214	584	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	391	403	IPR008271	GO:0004672\|GO:0006468
	Lapu3g01214	584	Gene3D	Transferase(Phosphotransferase) domain 1	354	572	-	-
	Lapu3g01214	584	MobiDBLite	consensus disorder prediction	230	249	-	-
	Lapu3g01214	584	PANTHER	CELL DIVISION PROTEIN KINASE	271	568	-	-
	Lapu3g01214	584	SUPERFAMILY	Protein kinase-like (PK-like)	266	567	IPR011009	-
	Lapu3g01214	584	FunFam	cyclin-dependent kinase G-2 isoform X1	257	353	-	-
	Lapu3g01214	584	Pfam	Protein kinase domain	272	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g01214	584	ProSiteProfiles	Protein kinase domain profile.	272	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g01214	584	Gene3D	Phosphorylase Kinase; domain 1	255	353	-	-
	Lapu3g01214	584	MobiDBLite	consensus disorder prediction	102	117	-	-
	Lapu3g01214	584	MobiDBLite	consensus disorder prediction	98	214	-	-
	Lapu3g01214	584	FunFam	Cyclin-dependent kinase G-2	354	583	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g01214	Lapu-Chr3	13064357	13071083	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g01214	267	568	Core Cell Cycle Gene Families	AT5G10270	45.283	2.44e-87	278

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-PITSLRE	Lapu3g01214		Pkinase	2.3e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g01214	K08818		-	gmx:100788840	915.99