Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01209 ATGGAGGCAGTGAGAGCAAACGGAATCAAAGGCCCTCTAAACATCACCGCTTTCGGTGACGTTCTACAACTCTCCCGGGCTCACCAGGAAGCACTCGCCTACACCGGCGTTCGCCTCATCCACGTCTCCAACGAGGGGAGAAACAGTGCCGATATTCTGGTTGACCTAATGTATTGGGTTTCTCAGAACCCTCCACCGGCGCACATATTTTTGATATCCGGCGATAGAGACCTCGCTGGCACTTTACACCGCTTGAGAATGAGTAATTACAATATCTTGCTCGCTACGCCAAAGAAAACTCCCTGTGTTTTCCACGGTGCTGCCACTATAGCCTGGCTGTGGCATTCGTTGCTCAACGGAGAGAATCTTACTGGAAAGGTTCTCAACCATCCTCCTGATGGGCCTTTTGGCTCTTGGTATGCAAGCTACAAGGAGGCGGTGACCGTGGCGGATCCAGCCGCGGCGGAACCGGTCAGTGTTACAACTCCGCAGGCTACCTCATCGCCCAATGTGGAGGTCTATGGGCGTTCGGTTCCTAAGTCTGTTGTGAAGAAGGTTTGGAGTATATTGAATCTGCATCCAGAAGGCATAAACATTAGTAATCTTCGCGTTGAGCTGGAGAAAGATGTGCGTTTGGATAAGGATCTATATGGACATAAAAAGTTTTCCCGCTTTTTGATATCGTTGCCACGGGTAGAGCTCAAGTGTGATGGTGATGATAGTTTTAGTGTACATCTGGCTCTTTTGGAAGAATCATGTGAGAAGAGTTCTTCGGAATCAACCATTTCTGGTTCTAAAAAAGAAGAGAAAGGATGTGCAGCTGCTCCAAAGCTAAGTGATGAGGGTAAACGTAAGGTTAGGGATGCTGATAGGAAATTGACAATTATGTCGGTCTTGGAAAGGAGTTTGGGTGACGTACAACCGGAGCCTTCAAAAAGGAGACCTGTTGAGGAAAATGAGTTGCGGAAGTCTATTGTGGCTTGTGACAGGTTTGTAGATGTGACTAATGCTCCACAGTCAGAAACTCAATTGTCACAAAAGGACACCAAAGAATCCAAAACTAAGAAGGATTCCCTAAAAGTGAGTTCAAAAAAATTGTCTGATAATGACACTGTTAGGTCTAAAGTTGCTGGTATGGAAAGTCATACAACTAAAGAGAGTCACTCTGCTGAAAATGATCAATTGATGGTAGAAAACAATGTTATGGTAAATGACACTGGTGGGTCTAAAGTTGCTGGTATGGAAAAACATACAACTAAAGAGAGTCACTGTGCTAGAAATGATCAATCGATGGTGGAAAACAATGTTATGGCAAATGATGAGTCTGGAAATTTTGAAGCAAAGAATAGACGTGAGACCCGAACTAGAAAGGAGGAAGTGCTCTCAGGCTATCTTCCAAGCCTATCTTCACCAGTTGATGCCTCTCAGGCTGTCCAAAAGCCTGGCGGAGGAAGTGCTGAAACTAATAAAAGAAGTCCAACACTGTTACCCTGGTTTAGACGGTGGTGGCCATTTGGGAAAAACAATGAAAAGTATGATGATTTGACGGTTCATCAGAGGGAGGTGGTTAGTCATGTTGAGGATTCAAAGTTATCTGAACTGGAGAAGACTGATAGTCAATCTGAAGAGGCCAAATCATCTGAACAGGATCATACTGTAAGCCAATCTGAAGAGCCCAAGTTATCAGAACTGGATCAGAATGTTAGTCATTCCGGAAAGCCTGAGTTATTTTCCAGTGCTTCCTTTTGGAATGATATGGAATCTTTTATCTCTGCACCCAAAGGATCACTTCTTTTCTCCCAGTCAAGAAGCAGGGAGGATGTGGTGCACAGATTACAAAATGGAGGACCCCTGCATCTCAGATCACTCCCCAAAAAAGATATCCTTCAATTGGTTGAAATGTTAATAGCAGACAAAAAATGGTTGGAGGAAAGGCCCTCCCAGACATTTCCTTTTAAGCTAACTCAGCCAGTTCAGAAGAGTTCATCGGTGGACCAATGCCATGGTGCCAATGGTTTGAGATCTCTCTTTCTAAGCAGAACATCACAATCGAACTCGCCAAAATCTTTAGAACATGATGTGGGGAAACAAAATGAGAGTGTATCACATGATGTGGGGATACAAAATCAGAGTGTTTCTCAAACACACATTTCGGCAGCAGTTGCTGAAACAAAATATATTGAGAGATCCAGAAATGATATATTAGATGACTGTCAGAAACTTGTGAATGAGATAGTAATGGAACACCCAGAAGGATATAATGTTAGTTCTTTCAAAAGACTATTTGTTGATAGGTATGGCTATAATCTTGATATACAGAAGCTTGGTTATAAAAAATTGGCATCCTTGCTACAGATAATGCCTGGGGTTAAATTTGAGTCCGCTTACATTTTTCCTTCTGCTTCTGCTGTCTGTGATTCTGATTTGGAAACTTCCATCCTCAAAACTCAAGCAACCACTAATAATCATGCAGTCTCCAACTCAGATAGCGAATTATCTGAGTCAACCCCGAAAGATGATAACTTGGAATCTCCATGGGAGGAGTTAGGTCCTGTTTCTATCAACAATTCCGACAACAGAGGTTTGGGTTTAAAGTCAAGTCAGAAATCTATAGAACTGGATACATCAAAATCAAAGCATCCTTGTTATGAACTTGTGTCAGATGACGAGTCTTCTGAATCTGAAGATGACTCTTGTTTAACTCGATCAAAAGAGCAGAGAAAGTCAAATTGTAATGAACAAGACAGTTCGTTTTGGGAAGCTATGGATTTCTGGTGCAGCTGCAAGGAAAGAGAGAACCGTGTCAAGAAGTCAGACAATGTTGACAGTTTGAGTGTTTCTGTGGCTGATATTTTAGATTCATCCATCGAGTCGTCCAGGAGTACCATTTCTGAAATTCCTTCATCAGAATACAGAGATAATACTGTCAATAAGTCAGACAATGTTGACAGCTTGGATGTTACTCTGGCTGATATTTTTAATTCATCTCCTGAGCCGACCAGGGTTACCCCTTCCAAAACATCTTCATCAAATTACAGAGAGAAACAAAGATCTCACAAGAACTATTCCTTCGTTGCTGATCCAGTCTTACCTAACAAGGACAAGCTGATTGGTGACTTCAAGAAAGCAGATGAGTCAAAAATGCGAAAACAGAGTTCCTGTTGCAAGTAG 3171 0.4251 MEAVRANGIKGPLNITAFGDVLQLSRAHQEALAYTGVRLIHVSNEGRNSADILVDLMYWVSQNPPPAHIFLISGDRDLAGTLHRLRMSNYNILLATPKKTPCVFHGAATIAWLWHSLLNGENLTGKVLNHPPDGPFGSWYASYKEAVTVADPAAAEPVSVTTPQATSSPNVEVYGRSVPKSVVKKVWSILNLHPEGINISNLRVELEKDVRLDKDLYGHKKFSRFLISLPRVELKCDGDDSFSVHLALLEESCEKSSSESTISGSKKEEKGCAAAPKLSDEGKRKVRDADRKLTIMSVLERSLGDVQPEPSKRRPVEENELRKSIVACDRFVDVTNAPQSETQLSQKDTKESKTKKDSLKVSSKKLSDNDTVRSKVAGMESHTTKESHSAENDQLMVENNVMVNDTGGSKVAGMEKHTTKESHCARNDQSMVENNVMANDESGNFEAKNRRETRTRKEEVLSGYLPSLSSPVDASQAVQKPGGGSAETNKRSPTLLPWFRRWWPFGKNNEKYDDLTVHQREVVSHVEDSKLSELEKTDSQSEEAKSSEQDHTVSQSEEPKLSELDQNVSHSGKPELFSSASFWNDMESFISAPKGSLLFSQSRSREDVVHRLQNGGPLHLRSLPKKDILQLVEMLIADKKWLEERPSQTFPFKLTQPVQKSSSVDQCHGANGLRSLFLSRTSQSNSPKSLEHDVGKQNESVSHDVGIQNQSVSQTHISAAVAETKYIERSRNDILDDCQKLVNEIVMEHPEGYNVSSFKRLFVDRYGYNLDIQKLGYKKLASLLQIMPGVKFESAYIFPSASAVCDSDLETSILKTQATTNNHAVSNSDSELSESTPKDDNLESPWEELGPVSINNSDNRGLGLKSSQKSIELDTSKSKHPCYELVSDDESSESEDDSCLTRSKEQRKSNCNEQDSSFWEAMDFWCSCKERENRVKKSDNVDSLSVSVADILDSSIESSRSTISEIPSSEYRDNTVNKSDNVDSLDVTLADIFNSSPEPTRVTPSKTSSSNYREKQRSHKNYSFVADPVLPNKDKLIGDFKKADESKMRKQSSCCK* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01209 1056 Gene3D - 729 795 IPR041966 -
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 346 371 - -
Lapu3g01209 1056 CDD PIN_limkain_b1_N_like 3 97 - -
Lapu3g01209 1056 ProSiteProfiles OST-type HTH domain profile. 178 248 IPR025605 -
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 525 572 - -
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 440 491 - -
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 995 1025 - -
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 885 907 - -
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 257 286 - -
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 468 491 - -
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 525 558 - -
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 995 1011 - -
Lapu3g01209 1056 Pfam NYN domain 10 108 IPR021139 GO:0004540
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 444 459 - -
Lapu3g01209 1056 CDD LOTUS 735 790 - -
Lapu3g01209 1056 Pfam OST-HTH/LOTUS domain 736 789 IPR025605 -
Lapu3g01209 1056 Pfam OST-HTH/LOTUS domain 180 239 IPR025605 -
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 261 286 - -
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 820 861 - -
Lapu3g01209 1056 ProSiteProfiles OST-type HTH domain profile. 734 808 IPR025605 -
Lapu3g01209 1056 MobiDBLite consensus disorder prediction 337 392 - -
Lapu3g01209 1056 PANTHER LIMKAIN B LKAP 2 744 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01209 Lapu-Chr3 13018367 13023037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01209 11 120 C2H2 Transcription Factor Family AT5G61190 45.536 5.01e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01209 - - pvu:PHAVU_003G208800g 1449.11