Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01207 ATGGCGTCTTCGTCGTCGTTGGCGAAGCGATGCCACTACGAAGTGCTCGATCTCCCCCGCGACTGCGCCCCCGAAGAGATCCGCTCCTCCTACCGCCGCCTCGCCCTTCAGCGCCACCCGGACAAGCTTGTAAAATCAGGACTCTCCCAAGAGGAAGCCACCGCGCAGTTCCAGGAACTTCAACACGCCTACGAAGTCCTCTCCGACCCCAAGGAACGTGCTTGGTACGATTCCCATCGTTCCCAGATCCTGTTCTCCGACCCCGATTCCCGCTCCAATTCACTCGTCCCCGACCTCTTCTCCTTCTTCTCCAACACCGTCTATTCCGGCTACTCCGACACCGGAAAGGGATTCTATAAAGTTTATTCCGATATTTTCGATAAAATCCACGCTAACGAGATCAATTTCGCGCGGAAATTGGGGCTCGGAGTTGATGCGGTTCGACAGGCTCCTGTAATGGGGAACTTGAATAGCCCCTACGCGCAGGTCACTGCGTTTTATGGATATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGTTGGGTGGACGAGTATGATGCTATGGCGGGGCCGAACCGGAAGTCGCGGCGGCTTATGGAGGATGAGAATAATAAGGCAAGGAGGAAGGCGAGAAGGGAGTATAATGATACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGACATGAGGGTGAAGAGGAGTGTGGAGATGGAGCGGAAGAAGAAAGAGGAGAGGGAGAGGAAGAAGAGGTTGGAGAAGGAGAGGAAGGAGAGAGCCATGGCGTATGAGGAGCCTGATTGGTCTAAGGTTGAGGGGGAGGAGGTGGTGGACGATTGGGTTGAGGAGGAGGAGGAGGAGGAGAAGAAGAAGGAGAAGGAGTTTTATTGTGTGCTGTGTGGGAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCGGAGTTCAAAGATTCCATTGGTGATGAGGAGGATTTGGAAGAAGGAAAGGAGGGATTGGGAAGTGAGGAAGATGGGGTTGGGGTGAATGATGATGGTGGTTATGGGGTTGGGGTGAATGATGGTGATGGTTATGGGGTTGGGGTGAATGGTGATGGGGTTGATGATTTGGAGGCGAGGATTCGGGATGGTCTTAATGTTGAAGAGGGGTTAACTAGAAACGAGGGTGAAGTGGATGACGAGGATGAGTTTTCCGATGCTTCGCATGTGAAGGAAGGGGAAGATGCCAACGGGTCTGTTAATCTTGATGATGATGGCAATGCAGATGATGATAACGATGAAAATGGTGTTCTTGAAGCAATGGTGGCGGGCCACATGAGCAGAAAACCACGAGCTTCAACGCACAAATCCAAGGCTTCGATAGCTCCATCTCAAGTTGAAAACGAGAATGGTGAGGTTGGCCCTATGGAATATAACAACCGGAAGAGCTAA 1476 0.5136 MASSSSLAKRCHYEVLDLPRDCAPEEIRSSYRRLALQRHPDKLVKSGLSQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPDSRSNSLVPDLFSFFSNTVYSGYSDTGKGFYKVYSDIFDKIHANEINFARKLGLGVDAVRQAPVMGNLNSPYAQVTAFYGYWLGFCTVMDFCWVDEYDAMAGPNRKSRRLMEDENNKARRKARREYNDTVRRLGDFVKKRDKRVIDMRVKRSVEMERKKKEERERKKRLEKERKERAMAYEEPDWSKVEGEEVVDDWVEEEEEEEKKKEKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFKDSIGDEEDLEEGKEGLGSEEDGVGVNDDGGYGVGVNDGDGYGVGVNGDGVDDLEARIRDGLNVEEGLTRNEGEVDDEDEFSDASHVKEGEDANGSVNLDDDGNADDDNDENGVLEAMVAGHMSRKPRASTHKSKASIAPSQVENENGEVGPMEYNNRKS* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01207 491 MobiDBLite consensus disorder prediction 312 334 - -
Lapu3g01207 491 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Lapu3g01207 491 SMART dnaj_3 10 72 IPR001623 -
Lapu3g01207 491 Pfam DnaJ domain 12 77 IPR001623 -
Lapu3g01207 491 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Lapu3g01207 491 Gene3D Classic Zinc Finger 287 350 - -
Lapu3g01207 491 MobiDBLite consensus disorder prediction 412 426 - -
Lapu3g01207 491 Gene3D DnaJ domain 2 94 IPR036869 -
Lapu3g01207 491 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Lapu3g01207 491 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Lapu3g01207 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Lapu3g01207 491 SUPERFAMILY beta-beta-alpha zinc fingers 287 340 IPR036236 -
Lapu3g01207 491 CDD DnaJ 11 69 IPR001623 -
Lapu3g01207 491 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Lapu3g01207 491 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 5 491 IPR044648 -
Lapu3g01207 491 Coils Coil 240 267 - -
Lapu3g01207 491 MobiDBLite consensus disorder prediction 312 369 - -
Lapu3g01207 491 MobiDBLite consensus disorder prediction 392 491 - -
Lapu3g01207 491 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
Lapu3g01207 491 PRINTS DnaJ domain signature 31 46 IPR001623 -
Lapu3g01207 491 PRINTS DnaJ domain signature 13 31 IPR001623 -
Lapu3g01207 491 PRINTS DnaJ domain signature 52 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01207 Lapu-Chr3 12980585 12984195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01207 1 337 C2H2 Transcription Factor Family AT1G74250 71.594 2.57e-164 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g01207 DnaJ 2.2e-20 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01207 K09506 - gmx:100788305 692.96