Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01204 ATGGCTCCTCCTCTTTATAGTGCCTTCAATGGAGAAATCGACGGTGAAAATCTACCTTATTTGATTGATCTCTGGACAACCGATCTCTATACCTATTTTCCTCATCAACCTATTTCGGAGAGTAATAGTTGTTCCTTAGTTCTCCCCTTTTTCGACGGAACCATTAGGGATAACAAAAGGGTGAAGAGAACGGTGGGAATCCCCGTTAATTGGTTAGGAAATTTGATCAGCAATTCCCATAGTTTTCTCACCACCAACGCCAACAACAGCCATAGGAATAGGGATAGCATACCGAAGCTCCATTTCAGAGATCACATACGGACTTACACTCAAAGATATCTCGCAGCTGAACCAGAAGAAGAGGCATCAGAAGATACAAATAGTTCAGAAAGCAGTGGAGCTGAAGAAGATGGTTGTCATGACGGGGTGAGGCTGGTTCAACTTCTAATAGCATGTGCAGAAGCAGTGGCTTGTCGAGACAAATCGCACGCTTCCATATTACTATCAGAACTCAAAGTCAACGCTTTAGTATTCGGATCTTCGTTCCAAAGAGTTGCTTCTTGTTTTGTTCAAGGACTAACCGAGAGGTTGAATCTGGTTCAGCCCATCGGGCCCGTGTGCCCGATGCCACCCATGATGAACATTATGGACACAGCCTCCGATGAAATGGAGGAAGCATTCAGGTTAGTTTACGAGCTGTGTCCACACATTCAGTTCGGGCACTTTGTCACTAATTCCATAGTATTGGAAGCCTTTGTGGGTGAGAGTTTTGTCCATGTCGTGGATCTCGGCATGACTCTTGGTTTACGACATGGACACCAATGGAGAGGACTAATGCAGAGCCTCGCCAATCGCACCGGTGACGAACGTGTTCGTCGTCTGCGAATCACGGCAGTTGGACTCTGTGACAGACTTGAATCCATTGGAGACGAACTCTCAATATATGCAACTAATCTAGGCATCAACTTAGAGTTCTCAGTTGTGAAAAAGAATTTGGAAAGTTTGAAACCGGAGGACATAGAAGTGAGGGAAGAAGAGGTTCTTGTGGTGAACAGCATTCTGCAGCTGCACTGCGTGGTGAAGGAAAGCCGAGGGGCTTTGAATTCAGTGCTGCAGATGGTTCATGGACTGGGGCCGAAAGTGTTGGTGATGGTGGAGCAGGACTCGAGTCATAACGGACCCTTTTTTCTTGGGAGATTTATGGAATCATTGCACTATTATTCTGCTATATTTGACTCCTTGGATGTCATGTTGCCCAAGTATGACACCAAGAGAGCGAAGATGGAGCAGTTTTACTTCGCTGAGGAGATAAAGAACATAGTGAGCTGTGAGGGGCCGTTGAGGATGGAAAGGCACGAGAGGGTGGATCAGTGGCGGAGGAGGATGAGCAGGGCGGGGTTTCAGGCGGCGCCGATTAAGATGGTGAGTCAGGCGAAGCAATGGCTTCTGAATAGCAAGGTTTGTGAGGGGTACACGGTGGTGGAAGAGAAAGGGTGTTTGGTTCTTGGATGGAAATCGAAGCCTATTGTGGCGGTTTCCTGCTGGAAATGCTGA 1554 0.4704 MAPPLYSAFNGEIDGENLPYLIDLWTTDLYTYFPHQPISESNSCSLVLPFFDGTIRDNKRVKRTVGIPVNWLGNLISNSHSFLTTNANNSHRNRDSIPKLHFRDHIRTYTQRYLAAEPEEEASEDTNSSESSGAEEDGCHDGVRLVQLLIACAEAVACRDKSHASILLSELKVNALVFGSSFQRVASCFVQGLTERLNLVQPIGPVCPMPPMMNIMDTASDEMEEAFRLVYELCPHIQFGHFVTNSIVLEAFVGESFVHVVDLGMTLGLRHGHQWRGLMQSLANRTGDERVRRLRITAVGLCDRLESIGDELSIYATNLGINLEFSVVKKNLESLKPEDIEVREEEVLVVNSILQLHCVVKESRGALNSVLQMVHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKMVSQAKQWLLNSKVCEGYTVVEEKGCLVLGWKSKPIVAVSCWKC* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01204 517 ProSiteProfiles GRAS family profile. 136 516 IPR005202 -
Lapu3g01204 517 Pfam GRAS domain family 145 516 IPR005202 -
Lapu3g01204 517 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 123 511 IPR005202 -
Lapu3g01204 517 MobiDBLite consensus disorder prediction 116 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01204 Lapu-Chr3 12952330 12953883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01204 137 516 GRAS Transcription Factor Family AT1G14920 37.692 4.51e-75 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu3g01204 GRAS 2e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01204 - - gmx:100813548 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01204 3 12952330 12953883 Lapu3g01204 3 12952330 12953883 ECH