Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01197 ATGCTGTATTACCAAATGCTTCACTCACGAACCTCTTTCCTGGATTTCCTCAAGGCACTTGAGGCTGACATCCAACATGCCAATGTAATGGCAGCTTCTATTCCAAGGGGGAAGGGAGGGGATTACCTTCAAATGAAGTTAGTATACAATAAACTGGCACCAATTTTTCTGTCTTTATTTCAATGGATGGATTACTCATGCTCGTGTCTACCTTCTATTCATTTTAATCTTTTCCGAGTACTTGTGTACAAGGTGCACACTAATGGAAAGTCAGATATGTATTCTAGTGGAAGAAAAGCAACCATAAGGGAGTTCTACTGTGTCATATTACCTTCACTCCAGCGCCTTCATGGTGATTTAGTAGAAGCTAGCATTGCTCAAGAAAATGATCACAACATTGAGATGATAACCAATAGGAATGACGCGGACAAGAGGAAGGCTTCAGATTTGGACTCGGAGAGAGACCATGAGTGTGGCATATGCTTAGAGTCTACCACCAAAATGGTTTTGCCCAATTGCTGCCATGCCATGTGTATAAATTGTTACAATGACTGGAACACGAGGTCAGAGTCTTGTCCATTTTGCCGGGGAAGTTTAGGGAGAGTTAATTCGGGGGATTTGTGGGTTCTAACATGTAGTAGAGATGTGATTGATATGCAAACCATAAATAGAGAAGATATGTTGCGTCTTTATCTCTTTGTAAATAATCTTCCCGAATATATTCCGGATGCTCTTTTCCTTACCTACTACGAGTACTTATTTTAG 765 0.4065 MLYYQMLHSRTSFLDFLKALEADIQHANVMAASIPRGKGGDYLQMKLVYNKLAPIFLSLFQWMDYSCSCLPSIHFNLFRVLVYKVHTNGKSDMYSSGRKATIREFYCVILPSLQRLHGDLVEASIAQENDHNIEMITNRNDADKRKASDLDSERDHECGICLESTTKMVLPNCCHAMCINCYNDWNTRSESCPFCRGSLGRVNSGDLWVLTCSRDVIDMQTINREDMLRLYLFVNNLPEYIPDALFLTYYEYLF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01197 254 FunFam RING/U-box superfamily protein 139 205 - -
Lapu3g01197 254 ProSiteProfiles Zinc finger RING-type profile. 158 196 IPR001841 -
Lapu3g01197 254 SMART ring_2 158 195 IPR001841 -
Lapu3g01197 254 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Lapu3g01197 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 204 IPR013083 -
Lapu3g01197 254 PANTHER RING FINGER PROTEIN 41, 151 12 252 - -
Lapu3g01197 254 Pfam Zinc finger, C3HC4 type (RING finger) 155 198 - -
Lapu3g01197 254 SUPERFAMILY RING/U-box 141 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01197 Lapu-Chr3 12908480 12910575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01197 132 199 RAD5 or RAD16-like Gene Family AT5G05130 30.435 5.27e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01197 - - zju:107418165 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01197 3 12908480 12910575 Lapu3g01197 3 12908480 12910575 ECH