Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01194 ATGGAAGGCTCTGAATCCGATTCTGCGCCACTTTCCATTTCCAATGGTGAAGATCCCCAATTGGGGGCTTCTTCTCCCCCTTTCCCCCCTCCTCCTCAACCGTCAGATCTCAATCACGCGGCGGAGCATGAGGCACTCTCTGGGGAGCTTCAGAGCAAGTTGGATTTGAAGGGTGAGGATGAAACTGACGACAAAGTTTCCGACTTGAACGACGGTGGAGGAGTTTGCGACGAAGAAACTGCTAAGGGCGATGGAGATAGTGGGGGTTCGGAGACAAATAGTTGGGATGAGGAAATGGTTGTTGATGTTGATGCTGATGAAGATGGTGCTGGTGCTGGTGATGTTCATGGTGATGATGGAGTGGAGAAGAAGGAAGAGAGAAGCAGTGATGTAACTCACCACTACCCTTTGAGGCCTGAAGCTGAGGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGGTTTAACTGCAAGTTTAATCACCCCATTAGGAGGAAAACCCAGGCTGTTAAGGCGGGAGAGAGAGAAGAACTCACAGAGAGATCAAGCGCAACAGAATGCAAGTATTATCAAAGATCTGGGGGTTGTAAGTTTGGAAAATCTTGTAAATATAACCACACAAGAGGAAAAATTTCAACAGTATCACCACCAGTTTTCGAACTTAACTTTCTTGGCCTGCCTATTCGTCAGGGGGAGAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAATTTGGAGCAAACTGCAAGTTCAACCATCCTGACCCTACAGCTGTTGGAGGATGTGATCCTCCTTCAGGGTTTGGTAACGGAGGGTCTATTTCATTACAAGGTGTATCACAACCATCTGTACCCTCCTGGTCTTCTCCAAGATTAAACGAAGCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGTGTTTCTACCCAAAGTTCTGAATGGAATGGATATCAGGCATCTGTCTACCTACCTGAGAGGAATATGCATCCACCTTCTACATTTGTCTTGAACAACCCAGCAGTCGATACAAATGTTTATATGCACCGTCAAAAGCAGATGTCTGTGGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGTAGCTACTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCATCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGCCTTCCTTTGAGACCTGACCAAAGTGTCTGCTCCCATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAAACTTGCAGCCCTTGATGATGCCTGGACTTGGTGACCAGTCATACTCAAATTCAGCTAGTGCTGAGGTGGCTGGGATAGATGAAAGTACAGGTGAAACTGATGGAACAATTCAGCAATCTGTGTAA 1443 0.4553 MEGSESDSAPLSISNGEDPQLGASSPPFPPPPQPSDLNHAAEHEALSGELQSKLDLKGEDETDDKVSDLNDGGGVCDEETAKGDGDSGGSETNSWDEEMVVDVDADEDGAGAGDVHGDDGVEKKEERSSDVTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIRRKTQAVKAGEREELTERSSATECKYYQRSGGCKFGKSCKYNHTRGKISTVSPPVFELNFLGLPIRQGERECPYYMRTGSCKFGANCKFNHPDPTAVGGCDPPSGFGNGGSISLQGVSQPSVPSWSSPRLNEASPFVPMMLSPTQGVSTQSSEWNGYQASVYLPERNMHPPSTFVLNNPAVDTNVYMHRQKQMSVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPLMMPGLGDQSYSNSASAEVAGIDESTGETDGTIQQSV* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01194 480 Gene3D - 333 401 - -
Lapu3g01194 480 Gene3D - 93 176 - -
Lapu3g01194 480 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Lapu3g01194 480 ProSiteProfiles Zinc finger C3H1-type profile. 366 394 IPR000571 GO:0046872
Lapu3g01194 480 ProSiteProfiles Zinc finger C3H1-type profile. 231 259 IPR000571 GO:0046872
Lapu3g01194 480 MobiDBLite consensus disorder prediction 1 21 - -
Lapu3g01194 480 SMART c3hfinal6 366 393 IPR000571 GO:0046872
Lapu3g01194 480 SMART c3hfinal6 412 439 IPR000571 GO:0046872
Lapu3g01194 480 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Lapu3g01194 480 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Lapu3g01194 480 SMART c3hfinal6 231 258 IPR000571 GO:0046872
Lapu3g01194 480 Gene3D - 177 265 - -
Lapu3g01194 480 Gene3D - 412 456 - -
Lapu3g01194 480 SUPERFAMILY CCCH zinc finger 410 438 IPR036855 GO:0046872
Lapu3g01194 480 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Lapu3g01194 480 MobiDBLite consensus disorder prediction 42 85 - -
Lapu3g01194 480 MobiDBLite consensus disorder prediction 1 134 - -
Lapu3g01194 480 MobiDBLite consensus disorder prediction 109 134 - -
Lapu3g01194 480 SUPERFAMILY CCCH zinc finger 137 166 IPR036855 GO:0046872
Lapu3g01194 480 MobiDBLite consensus disorder prediction 457 480 - -
Lapu3g01194 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 208 IPR000571 GO:0046872
Lapu3g01194 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 164 IPR000571 GO:0046872
Lapu3g01194 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 257 IPR000571 GO:0046872
Lapu3g01194 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 368 393 IPR000571 GO:0046872
Lapu3g01194 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 414 438 IPR000571 GO:0046872
Lapu3g01194 480 SUPERFAMILY CCCH zinc finger 234 258 IPR036855 GO:0046872
Lapu3g01194 480 SUPERFAMILY CCCH zinc finger 371 395 IPR036855 GO:0046872
Lapu3g01194 480 SUPERFAMILY CCCH zinc finger 186 212 IPR036855 GO:0046872
Lapu3g01194 480 ProSiteProfiles Zinc finger C3H1-type profile. 412 440 IPR000571 GO:0046872
Lapu3g01194 480 PANTHER PROTEIN PHOSPHATASE RELATED 57 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01194 Lapu-Chr3 12883402 12888161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01194 132 472 C2H2 Transcription Factor Family AT3G02830 39.945 1.41e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu3g01194 zf-CCCH 7.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01194 - - vun:114178095 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01194 3 12883402 12888161 Lapu9g00833 9 12289629 12294604 ECH
Lapu3g01194 3 12883402 12888161 Lapu3g01194 3 12883402 12888161 ECH
Lapu3g01194 3 12883402 12888161 Lapu9g00833 9 12289629 12294604 PCT