Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01193 ATGGCGGCTTCCGAGGAAGTATCACCGTGGCTGCAGTCGCTGCCGGTGGCGCCGGAGTACCGCCCAACCGCCGCGGAGTTCCAAAACCCGATCGCATACATCTTCAAAATCGAGAAAGAAGCCTCTCAATACGGAATCTGCAAGATCATTCCCCCGCTTCCCCCTTCCCCCAAGAAAACCGCAATTGCCAACCTCACGCGCTCCCAGCCCACCTTTACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCCGCGCGCAGCCGGTGCGCCGCCGCGTCTGGCATAGCGGTCACCACTACTCCCTCCGGGAATTCGAAGCCAAGGCTAAGGCCTTCCACAAAACCTACCTCAAGAAAAACAAACCCAAGCCCTCCCCTCTCGAACTCGAAACGCTCTACTGGAAAGCCACCTTAGACAAACCCTTCTCCGTCGAATATGCGAACGACATGCCTGGCTCCGCCTTTAGCCCACTCCGTGCTTCGCGCGATGCCGATTACGTTGGTGACACCGCGTGGAACATGAGAGCGGTTTCTCGGTGGAGCGACTCGCTGCTTAGGTTCATGAAGGAGGAAATTCCCGGCGTGACGTCACCTATGGTCTACGTGGCCATGTTGTTCAGCTGGTTCGCGTGGCACGTGGAGGATCACGACTTGCATAGCTTGAATTACCTCCATTTCGGCGCTCCCAAGACTTGGTACGGCGTGCCTAGGGACGCTGCCGTTGCGTTCGAGGAGGTTGTCAGAGTTCATGGCTATGGCGGAGAGATTAATCCTCTGGTTACTTTTGCTATTCTTGGTGAGAAAACCACGGTGATGTCGCCGGAGGTTTTTGTTGGCGCCGGTGTTCCCTGCTGCAGGCTAGTTCAAAATGCTGGGGAATTTGTAGTGACGTTTCCTCGAGCGTATCACACAGGTTTTAGTCATGGGTTTAACTGTGGAGAGGCGGCTAACATTGCGACGCCTGAATGGTTAAGGTTTGCTAAGGATGCTGCTATTCGGAGGGCTTCCATTAACTATCCTCCCATGGTGTCACATTTCCAGTTGCTTTATGACCTTGGCCTTGCGTTGTGTTCTAGAATTCCTGGAAGCATTAGAGCTGGACCACGGAGTTCTCGGCTTAAATATAAGAGAAACCGTGAAGGAGAAACTATAATTAAAGAACTATTTGTACAGGACGTGATAGAGAACAATGGTCTGCTTCACACACTGGGCAAAGGATCTGCTATAGTACTTCTTCCTCGCAGCTCTTCTGACTTTTCTGTTTGCTCAAAATTACGTGTTGGATCACAACAACTAAAAGTGAACCCTGACTTTTCTCTCAATGTATACAATTATGAGGGAATGGATTCCTCAGATTTTATTTCTGATGACCTTGTGTTCAACAGGAATCATGGAATCAAACAAGTAAAGAGTTTTTATTCTGTAAAAGAGAAGTTTGTTACGTTGTGTGAAAGGAACAGGGTTTTGCCATTCAGTCCGAATGGGAACATATGCACTTCAAGTTCAAAAGCACTGCAAGGAGACAATGAAACGGAAACAGATCAAGGAGATGGGTTGTCAGATCAGAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCCATTGTACAGCCTAGAGAACCAGCAGCTACATACCTTATGTCTGCTGACTGTAGTTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTAACTAGCAATAAATTTTCAATTGCCCATGAAGATGCAAGTATTCCCAATCCAAGAACATATACAGGATGGACTAAACAAAATGCCCAACATGATTCAAATGGTGTTCCCGTTCAATCTTTTGAGCACCATGCACAGATTGCTGATCAAAATTACGAGGAGGCTTTAAATTCTGAAAGAGAAAAAGGAAATACAGCTCTTGCATTATTGGCATCAGTGTATGGAAATTCGTCTGACTCTGAGGAAGACCAGGGGGGATTAGATATTGCACTTGATGGTGATGAATTGAATGTAATAAACCATCCATCCACTAATGGATCTCAGGAAATGTATAGTTTGCCTTCTCATTTTCAAGATTCCCATGCTAGTTCCATGGTTAGAGTCATTAGACTTGATAAAGGAGATGATATTCATTCAAGAAGAATAGACAATTATGACTATTATATGCATAAGAGAGTTGAGCACATTATGACTCCTTTTGACTCCTCTGTTAAGTCAGAAGATCATGAAACCACTTCAGGGATGGCATTTAGAAATACTAGGGCTTTACCCCATTCCACCTTGAATTGTTCCCAAGATACTCATACCGATGAAGACTCGTCTAGAATGCATATCTTCTGTTTAGAGCATGCTGTAGAAGCAGAGCAACAACTTCGCCCAATAGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAATTTGTCGCAGAGGAACTGGGGATTGGTTATATGTGGAAGAATACTACATACAGGCAAGCCAACAGGGAAGATGAGGAGAGGATTCAATCGGCTCTGGATAGTGAGGAAACTATTCCTGGAAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGTCGTTCAGCACTTTACAGTAAGCAGATTCCTTACAATTCTGTTATATATAAAGCATTTGGTCAAAGCTCCCCAGCTAGCTCACCTACAGAGCCCAAGGTCTATCAGAGAAGGACCAACAAGCAGAAAAAGGTAGTTGCCGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAAGTCCATTCCCTTTTAGCAAAAAGAGATTCTGAAGATGTCGAGGATGAAACAAGCTTACATGGGTGGCCATTGCCTGATGAGAAAATTGAGAGATCAGAAAGTAACCACAGAAGCAATAGTGCGATTACAAAATCTGGTAATAAATGGAAAAAATCTGGTGAGAAAGGAGGAACCTGGGAAGAAAGTTTGGCTGAGAGAGATTGGTTTTCAGATAATTCCATTGAAGATAAACCCAATAAATATCAAAGGAGAATTCTTGGGAGTAAGCGAACCAGGCATATTGAAAGAGATGAGACTGCTTCAGAAGGGGATTATTCTCCTCTGCCCCATCATAGAAAGCCTATAAGCAAGCATTCAGAATCTAGTGAAAATGATGCAATTTCTGATGATTTGCTGGATGATGATTATTGTATACAGCGTCAGAGGAGAGCTAACACCAATGAAGCTAAATTTATTGACAGTGATGTGCTTTCAGATGATACAATGGACTATGGTTCTGATTGGTTGCATAGGGGAGAGCTTAGCAATGAGCAAGATGCTATCTCAGACAATTCATTGGGTGTTGGTTCTCTTCGGCTGTGCAAGAACAATCCTATAGGCAAGTATGACAAATACATTACTGAAGAAGACTTGGTTTCTGATGACCAAAGGGAGGTTTGTTATTGGAAGAAAGGGAAGATATCTAAAGGAAGAAAAAGATCCCTTTCTGCAAAAAATATAGATAAACTGGAGCACCATAGGCAGAAGCAGCAACAAAGGAATCTGAGAAGCAGGCAAGGCCAGCACCTTGCAATAGAGAATATTATTTCTGATGACCAAATGGAGGGCCATTTTTTCAAGTACCAAAGAAGGATTCCTAAAAGGAGGCAAGCCAAGTTCATCAATGAGGAAGATGTTATGTCTGATGACCAGTTGAAGGATCACTTTCAGAAGCCCCAAAGAACTACTCGAAGGAGCAGGCAAAATAAATACAATGATAAAGATGTTATTGATGACTTGGCAGAAAATAATTTTCATATACTGTATAGAACTCGTAAACAGAAGCAAGCTAAAGGTATGGATGAGGACAATATAAATTCAGATGATCAAATGGAGGATATTTTTCATCAGCAGCACAAAAGAACTCTTCAAAGTAAGCAATCTAAATCACATATTCTTCAACAAATGAAACAAACTAATCTTCTCCATGTGAGAAACAAGATATCCTGTCCTGTGAAACAAGGTGATGTGCTAATGAAATCAAAGGCTGCTCGGCGGGCAAAGAATCAATCTGGTAACCCCAAAGACATAACATTACGTGTGGAAGAGGAGGAAGATGGTGGACCTCGCACAAGACTTAGGAAAAGAGTCCTAAAAAATCAAGAGTCTGAAGGAAAATTAAAAGAAAAGAGAATCAAAAGGGAAAAGGTGAAGAATACAACAGGTGTGAAGGTTTCAGCTGGCCATGCCAAAGCAAAGGATGAGGAATCAGAATATCAGTGTGACATCGAGGGTTGTACCATGAGTTTTGGGTCTAAACAGGAGCTGTTGCAACACAAGAGAAACATTTGTCCTGTGAAAGGATGCGGAAAAAAGTTCTTTTCACACAAATATCTAGTGCAGCATCGTCGAGTTCATGAGGATGACCGCCCTTTGAAGTGTCCTTGGAAAGGGTGCAAGATGACTTTCAAGTGGGCATGGGCACGCACTGAGCACATTCGAGTCCACACTGGTGCTCGTCCTTATGTGTGTGCTGAAACAGGGTGTGGGCAAACATTTAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAAACTGGTCATGCAACAAAGAAGAATTGCTGA 4602 0.4374 MAASEEVSPWLQSLPVAPEYRPTAAEFQNPIAYIFKIEKEASQYGICKIIPPLPPSPKKTAIANLTRSQPTFTTRQQQIGFCPRRAQPVRRRVWHSGHHYSLREFEAKAKAFHKTYLKKNKPKPSPLELETLYWKATLDKPFSVEYANDMPGSAFSPLRASRDADYVGDTAWNMRAVSRWSDSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGSIRAGPRSSRLKYKRNREGETIIKELFVQDVIENNGLLHTLGKGSAIVLLPRSSSDFSVCSKLRVGSQQLKVNPDFSLNVYNYEGMDSSDFISDDLVFNRNHGIKQVKSFYSVKEKFVTLCERNRVLPFSPNGNICTSSSKALQGDNETETDQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAATYLMSADCSFFNDWVVGSGVTSNKFSIAHEDASIPNPRTYTGWTKQNAQHDSNGVPVQSFEHHAQIADQNYEEALNSEREKGNTALALLASVYGNSSDSEEDQGGLDIALDGDELNVINHPSTNGSQEMYSLPSHFQDSHASSMVRVIRLDKGDDIHSRRIDNYDYYMHKRVEHIMTPFDSSVKSEDHETTSGMAFRNTRALPHSTLNCSQDTHTDEDSSRMHIFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIGYMWKNTTYRQANREDEERIQSALDSEETIPGNGDWAVKLGINLFYSANLSRSALYSKQIPYNSVIYKAFGQSSPASSPTEPKVYQRRTNKQKKVVAGKWCGKVWMSNQVHSLLAKRDSEDVEDETSLHGWPLPDEKIERSESNHRSNSAITKSGNKWKKSGEKGGTWEESLAERDWFSDNSIEDKPNKYQRRILGSKRTRHIERDETASEGDYSPLPHHRKPISKHSESSENDAISDDLLDDDYCIQRQRRANTNEAKFIDSDVLSDDTMDYGSDWLHRGELSNEQDAISDNSLGVGSLRLCKNNPIGKYDKYITEEDLVSDDQREVCYWKKGKISKGRKRSLSAKNIDKLEHHRQKQQQRNLRSRQGQHLAIENIISDDQMEGHFFKYQRRIPKRRQAKFINEEDVMSDDQLKDHFQKPQRTTRRSRQNKYNDKDVIDDLAENNFHILYRTRKQKQAKGMDEDNINSDDQMEDIFHQQHKRTLQSKQSKSHILQQMKQTNLLHVRNKISCPVKQGDVLMKSKAARRAKNQSGNPKDITLRVEEEEDGGPRTRLRKRVLKNQESEGKLKEKRIKREKVKNTTGVKVSAGHAKAKDEESEYQCDIEGCTMSFGSKQELLQHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAETGCGQTFRFVSDFSRHKRKTGHATKKNC* 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01193 1533 ProSitePatterns Zinc finger C2H2 type domain signature. 1473 1495 IPR013087 -
Lapu3g01193 1533 Pfam JmjC domain, hydroxylase 199 317 IPR003347 -
Lapu3g01193 1533 SUPERFAMILY beta-beta-alpha zinc fingers 1439 1477 IPR036236 -
Lapu3g01193 1533 MobiDBLite consensus disorder prediction 1160 1176 - -
Lapu3g01193 1533 SMART JmjN_1 16 57 IPR003349 -
Lapu3g01193 1533 Gene3D Cupin 10 339 - -
Lapu3g01193 1533 MobiDBLite consensus disorder prediction 1006 1051 - -
Lapu3g01193 1533 SMART c2h2final6 1418 1440 IPR013087 -
Lapu3g01193 1533 SMART c2h2final6 1471 1495 IPR013087 -
Lapu3g01193 1533 SMART c2h2final6 1441 1465 IPR013087 -
Lapu3g01193 1533 SMART c2h2final6 1501 1527 IPR013087 -
Lapu3g01193 1533 SUPERFAMILY Clavaminate synthase-like 114 338 - -
Lapu3g01193 1533 Pfam jmjN domain 18 51 IPR003349 -
Lapu3g01193 1533 ProSitePatterns Zinc finger C2H2 type domain signature. 1503 1527 IPR013087 -
Lapu3g01193 1533 ProSiteProfiles Zinc finger C2H2 type domain profile. 1501 1532 IPR013087 -
Lapu3g01193 1533 FunFam Probable lysine-specific demethylase ELF6 10 339 - -
Lapu3g01193 1533 ProSiteProfiles Zinc finger C2H2 type domain profile. 1441 1470 IPR013087 -
Lapu3g01193 1533 MobiDBLite consensus disorder prediction 934 983 - -
Lapu3g01193 1533 ProSiteProfiles Zinc finger C2H2 type domain profile. 1471 1500 IPR013087 -
Lapu3g01193 1533 MobiDBLite consensus disorder prediction 934 963 - -
Lapu3g01193 1533 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1467 - -
Lapu3g01193 1533 Gene3D Classic Zinc Finger 1439 1525 - -
Lapu3g01193 1533 SMART cupin_9 166 335 IPR003347 -
Lapu3g01193 1533 MobiDBLite consensus disorder prediction 1006 1053 - -
Lapu3g01193 1533 SUPERFAMILY beta-beta-alpha zinc fingers 1481 1525 IPR036236 -
Lapu3g01193 1533 ProSitePatterns Zinc finger C2H2 type domain signature. 1443 1465 IPR013087 -
Lapu3g01193 1533 ProSiteProfiles JmjC domain profile. 166 335 IPR003347 -
Lapu3g01193 1533 FunFam Probable lysine-specific demethylase ELF6 1468 1497 - -
Lapu3g01193 1533 Coils Coil 1379 1399 - -
Lapu3g01193 1533 MobiDBLite consensus disorder prediction 1159 1186 - -
Lapu3g01193 1533 MobiDBLite consensus disorder prediction 1229 1250 - -
Lapu3g01193 1533 FunFam Probable lysine-specific demethylase ELF6 1498 1527 - -
Lapu3g01193 1533 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01193 Lapu-Chr3 12870884 12880773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01193 1367 1531 C2H2 Transcription Factor Family AT3G48430 62.712 1.97e-65 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g01193 JmjC 1.4e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01193 - - gmx:100775813 1975.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01193 3 12870884 12880773 Lapu3g01193 3 12870884 12880773 ECH
Lapu3g01193 3 12870884 12880773 Lapu3g01193 3 12870884 12880773 PCT
Lapu9g00834 9 12299741 12309516 Lapu3g01193 3 12870884 12880773 PCT