Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01192 ATGGCTTCGAGCGAGGGGTTTCTGACGGATGGGCAGAGAGAACTGCTAAAAATTGCGAGTCAAAATGCGGAAAATCTGTCTTCGTCTCCAAAATCCCCGTCGTCCTTGCTTTCTGACCATCATGTGAAAGCCCCTGCTGGTGGCAAGGCACAAACCGCTGGGATAGCTGTGAGGCATGTGCGTCGGTCACACTCAGGGAAGTATGGGCGGGTGAAGAAAGATGCAGATGGTGCTGGTGGTAAGGGCACTTGGGGGAAATTGCTTGATACTGATATTGTTTCTCACATAGATAGGAATGATCCAAATTATGACAGTGGCGAGGAGCCCTATCAGCTGGTTGGATCTACTGTTACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCATCATAGAGGAGTATTTTAGTAATGGGGATGTGGAATTGGCAGCATCTGACCTCAGAGAACTTGGCTCTAGTGAATATTATCCATACTTTATTAAACGCCTTGTGTCCATGGCAATGGACAGGCACGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCTGCATTGTATGCTGATGTCATCAGCCCTTCACAGATCAGGGATGGGTTTTTTATTCTTCTCGAATCTGCTGATGATCTTGCTGTGGATATACTGGATGCGGTAGATATCCTTGCATTATTCTTGGCCCGGGCTGTTGTTGATGACATTCTTCCTCCCGCCTTTCTTGCCAGGGCAATGAAGGCTCTTCCAGAGTCTTCCAAGGGAGTTCAGGTAATCCAGACTGCTGAAAAGAGTTATCTCTCAGCTCCACACCATGCAGAGCTTGTGGAGAGGCGATGGGGTGGTAGCACACACATAACTGTTGAAGAAGTGAAGAAGAAGATAGCTGATTTACTTAGAGAATATGTGGATAGTGGCGACACATTGGAAGCCTGTAGGTGTATACGTGAGTTGGGGGTTTCATTCTTCCATCACGAGGTTGTTAAGAGGGCTTTGGTACTTGCCATGGAGATTCGTTCAGCAGAACCTCTAATGTTGAAATTATTAAAAGAAGCCGCAGAAGAAGGACTTGTTAGTTCTAGCCAAATGGTGAAGGGGTTTTCTCGCTTGGCAGAATCCCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAGGCATTGTTTCAGTCATTTGTCCCCAAGGCAATATCTGAAGGATGGCTTGATGCTTCTTCACTTACCAAACCTGCAATTGAAGATGGGGATATACAAGTTGAAGACGAGAAGGTGAGGAAGTTCAAAAAGGAATCTGTAACTATAATTCATGAGTATTTTCTTTCTGATGACATTCCTGAACTGATTCGAAGTCTTGAAGATCTCAGAGCTCCCGAGTATAACCCGATATTTTTGAAGAAGTTAATAACTCTTGCCATGGACCGAAAGAACAGAGAAAAGGAAATGGCATCTGTACTGCTATCTGCACTTCACATAGAGATATTCTCAACTGAGGATATAGTTAATGGTTTTGTCATGCTCCTGGAAACTGCGGAAGATACAGCTCTGGATATACTTGATGCTTCAAATGAGCTTGCTTTGTTTTTAGCTCGGGCTGTTATTGATGATGTATTGGCTCCACTGAATTTGGAAGAAATTGGCAGCAGGTTACCACCAAAGTGCAGTGGTAGTGAAACTGTGCGTATGGCTCGGTCACTCATAGCTGCTCGTCATGCTGGGGAGAGGCTATTGAGATGCTGGGGTGGAGGCACGGGATGGGCCGTGGAGGATGCGAAGGACAAGATTATGAAGCTCTTGGAAGAGTACGAAAGTGGAGGGGTTGTGAGTGAAGCTTGCCAATGTATCCGTGACCTGGGAATGCCTTTCTTTAACCACGAGGTAGTGAAGAAAGCATTGATTATGGCCATGGAGAAAAAGAATGATCGTATGCTAGATCTACTGCAGGAGTGCTATAGTGAGGGCCTGATCACCATTAATCAAATGACTAAAGGTTTCACCCGAATAAAGGATGGTCTCGATGATCTGGCTCTGGACATTCCAAACGCAAAGGAGAAATTTGGCTTCTATGTGGAGCATGCTCAGTTGAAGGGCTGGCTTCTACCATCGTTTGATTCGCCTACAACAGATGCTTAA 2118 0.4523 MASSEGFLTDGQRELLKIASQNAENLSSSPKSPSSLLSDHHVKAPAGGKAQTAGIAVRHVRRSHSGKYGRVKKDADGAGGKGTWGKLLDTDIVSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSIIEEYFSNGDVELAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPSQIRDGFFILLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARAMKALPESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRALVLAMEIRSAEPLMLKLLKEAAEEGLVSSSQMVKGFSRLAESLDDLALDIPSAKALFQSFVPKAISEGWLDASSLTKPAIEDGDIQVEDEKVRKFKKESVTIIHEYFLSDDIPELIRSLEDLRAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLETAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALIMAMEKKNDRMLDLLQECYSEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFGFYVEHAQLKGWLLPSFDSPTTDA* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01192 705 FunFam Programmed cell death protein 4 273 407 - -
Lapu3g01192 705 SUPERFAMILY ARM repeat 420 578 IPR016024 -
Lapu3g01192 705 Pfam MA3 domain 288 399 IPR003891 -
Lapu3g01192 705 Pfam MA3 domain 124 235 IPR003891 -
Lapu3g01192 705 Pfam MA3 domain 423 533 IPR003891 -
Lapu3g01192 705 Pfam MA3 domain 587 694 IPR003891 -
Lapu3g01192 705 Gene3D - 274 405 - -
Lapu3g01192 705 Gene3D - 573 701 - -
Lapu3g01192 705 SUPERFAMILY ARM repeat 121 281 IPR016024 -
Lapu3g01192 705 ProSiteProfiles MI domain profile. 287 408 IPR003891 -
Lapu3g01192 705 PANTHER PROGRAMMED CELL DEATH 4 5 699 IPR039778 GO:0045892
Lapu3g01192 705 SMART ma3_7 423 534 IPR003891 -
Lapu3g01192 705 SMART ma3_7 124 235 IPR003891 -
Lapu3g01192 705 SMART ma3_7 586 695 IPR003891 -
Lapu3g01192 705 SMART ma3_7 288 399 IPR003891 -
Lapu3g01192 705 FunFam programmed cell death protein 4 412 566 - -
Lapu3g01192 705 MobiDBLite consensus disorder prediction 1 78 - -
Lapu3g01192 705 ProSiteProfiles MI domain profile. 585 704 IPR003891 -
Lapu3g01192 705 MobiDBLite consensus disorder prediction 15 36 - -
Lapu3g01192 705 ProSiteProfiles MI domain profile. 422 543 IPR003891 -
Lapu3g01192 705 Gene3D - 413 566 - -
Lapu3g01192 705 Gene3D - 116 264 - -
Lapu3g01192 705 ProSiteProfiles MI domain profile. 123 244 IPR003891 -
Lapu3g01192 705 FunFam programmed cell death protein 4 115 266 - -
Lapu3g01192 705 SUPERFAMILY ARM repeat 284 404 IPR016024 -
Lapu3g01192 705 SUPERFAMILY ARM repeat 582 698 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01192 Lapu-Chr3 12858232 12863671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01192 589 692 Eukaryotic Initiation Factors Gene Family AT5G57870 32.710 1.09e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01192 - - gmx:100784244 1278.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01192 3 12858232 12863671 Lapu3g01192 3 12858232 12863671 ECH