Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01191 ATGGATGGTAGGAGACATTCTGTTGACATTCCTATTTCCAAAACTCTCGTGGCACTGAGGAGAGTAAGGTCATTGAGGGATCCATCAACTAATGGTGTTAGCAGACTCTCTCCTTTGATTGACGATGGAGATTGGGATAATGGATCCAGTAATGGGGTTTCTCTGAGTTTGAGATTTCTGAATGCTTCTCATGCTGGTGATTGTGACGGTAATGGTTTTCCAAGATCAAATAGTTTAGACTTTAAGGGTCAGAGAGAGCAGGAAACCGCTGAGTTAGAATTGAATATGTTGAACTCAAAGATGAACTATTGTGGGATGTCACGTCAGGAAGGGCGAGATGACAAACTTGTTTACTCTAATCCTAAGCAGCAAGGTATTTCTGGAGATAAATCGCTAAATGAAAGCTGTTGTAGTAACCATGAAGGTGGAGGATTGGATTTGGTTGCTATCACGCCTCCTTGTAATCATTTGAAGGATGGAGAGTTATGCTATTTATCAACTGCATTGAGAGTAGATCACTCAAAGTCAGCTAGAAAATTACTACGCAAGAACCAAATGAAACCATCAGGAGTGGTGCGTGATACAGCAAGCCATGTAGGAAGTCAACAGTGCCTTTCTGTTTATGATTCTATCTCAGCTCGTTGTGCCTTGGAACATGTCACTCAAGATGTTGATGCTTTAGATAATCACCATGGATGTGGATTAAGGAGTTGTTGGTCAAACTCACCAAGGTTTAGAGAACCAAATCATTATTCTGAAATAGAAGGCCTTCCCTTGATATTGCAGCACGCAAATGAAACGGATCTCAATGGACATAGAACCATTAGACGCATTGGTGGTGAAACTAGTCCAACTATGGAAACTCCTAGAAGTTTATCTGTGAAATTCAGGCCAAAATCATTTGATGATTTGGTTGGACAAAATGTGATAGGTAAGTCTCTTTTGGGTGCTATCTCTAGAGGAAGGATAGCATCATTTTATCTCTTCCATGGTCCACGCGGCACAGGCAAGACCTCAGCCTCGAGAATATTTGCTGCTGCACTGAATTGCCTATCCTCTTTGGAGCAAAAGCCTTGTGGTCTGTGTAGAGAATGTGTTTTGTTCTTCTCTGGAAGAAATAAAAATGTTACTGAAGTGGATTCTTTGAGAATCAATCGTGCAGAGAAGGTTAAATCCCTTATTAAGCATGCCTGCGTTCCTCCAGTTTCCTCAAGTTTTAAGGTGTTCATTGTTGATGAGTGCCAGCTATTGCATGGGGAAACATGGGCGTGCCTTTTGAATAGTCTAGAAAATGTTTCTCCTCGTGTGGTTTTTGTGATGATCACTCCTGATTTGGATAACCTTCCTCGGAGTGCAGTCTCCCGGGCTCAGAGGTATCACTTTGCAAAGATTAAAGATGCTGACATTGTAAGAAGATTGGAAAAAATTTGTGTCGAAGAAGGTCTTGAATCTGAACAAGTTGCTTTGGACTTCATTGCTGCTAGATCCTGTGGTTCTCTTAGGGATGCTGAAACTATGCTTGATCAACTGAGTTTGCTTGGTAAAAAGATCACAACTTCCTTAGTTCACGAGCTTACTGGGGTCATTTCTGATGATGAATTGCTTGATTTGCTGGACCTAGCTTTTTCATCTGACACTTCAAATACAGTTATAAGAGCCCGGGAACTTGTCAGAGCAAGGATAGATCCTTTGCAACTTATATCACAGTTGGCCAATCTTATTATGGACATTCTGTCAGGGAAATGTGAACTTCGTGGTTCAGAAATAAAAACAGGATTTCATAATAGATATACCTCGGAAGCGGACCTGCAGAAACTAAATCATGCATTAAGAATACTGTCTGAAACAGAGAAGCAGTTGAGAATTTCCAAGAATCAAACGACATGGTTCACTGCAGCTCTTCTACAGTTGAGCTCCGTAGAATATTCATCTGTGGATACAAATACTACAAAGTTGTGTACACGAGCTGCATCCATTAGAGATGGTGATATCTGCAGTACTTCTCCTAAAGGGAACAGCTTGGAGCATCTTGTTACAACAGATCAATGTGATGATAAGTCATATAGATTAGGAGTACTGGAGGATCACAAAGGAACATTAGATTCTATATGGTATAAGGCTACTGAGATGTGTCAATCTAGCAGGCTCAAAGCTTTTCTCAGGAAACAGGGGAAGTTGTCTTCAGTTTGTATTAGTCAAGGCCATGCTGTTGCCGAGTTGGAGTTCCACCATCGGGACTATGTAAGCAGGGCTGAGAAGTCATGGAAGTTGATTGCAAGTTCTCTGCAGTTCGTATTGGGCTGCAACCTTGAGCTCAGAATAAATTATGTTCCTTCTTGTACCTCGGATTCTATGTATGCTAAATTGAAGAGGTCATCCTTCAATTTCTTCGGTTGTTCTCGAAGAATTGGTTGGAAATCTTTATCATCTAATGAACAGGGAAGTGAATCCGACTATGCTGAATACACCTCTCAAAAGCCCATTATGAAGGATCAAACTCTAACTTGTTCCTCTGAGTATGAACCCCGGGTGCCACCATTTGAGTCCTGCCATGGAATTGGAATGCAGGTTATAACAACTTTGAGAAGTAGTGAAGGAAATTTGCTAAGCTCAGGGAAAATGTTTTTGAATAGGCCAGATCAAGAGACTCCAAGAATTTCTTGTTCGAGAGTTGATTCGTGTACGGAAGATGGATGCAATTGCGAACACTTAGCTTCATCGACCCTTGATTTAGATAATCAGTCCGACTGTTTTCCTGGAACCCGCTGGCTTCATAAAAAGTTTGGTTCTTCTTATGCACCACAACGGAAGGATTTTGTTTTATCTATCCCCAAGTTCAAATGTTCTGAGATTTGTAGATATGATCTGGAACCCTATGTCTTTTCTCACCGTTCTAACAACTGCGCTCGAGCTGCTGAGGAGAAGGTATAG 2931 0.4125 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNGVSRLSPLIDDGDWDNGSSNGVSLSLRFLNASHAGDCDGNGFPRSNSLDFKGQREQETAELELNMLNSKMNYCGMSRQEGRDDKLVYSNPKQQGISGDKSLNESCCSNHEGGGLDLVAITPPCNHLKDGELCYLSTALRVDHSKSARKLLRKNQMKPSGVVRDTASHVGSQQCLSVYDSISARCALEHVTQDVDALDNHHGCGLRSCWSNSPRFREPNHYSEIEGLPLILQHANETDLNGHRTIRRIGGETSPTMETPRSLSVKFRPKSFDDLVGQNVIGKSLLGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSSLEQKPCGLCRECVLFFSGRNKNVTEVDSLRINRAEKVKSLIKHACVPPVSSSFKVFIVDECQLLHGETWACLLNSLENVSPRVVFVMITPDLDNLPRSAVSRAQRYHFAKIKDADIVRRLEKICVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKKITTSLVHELTGVISDDELLDLLDLAFSSDTSNTVIRARELVRARIDPLQLISQLANLIMDILSGKCELRGSEIKTGFHNRYTSEADLQKLNHALRILSETEKQLRISKNQTTWFTAALLQLSSVEYSSVDTNTTKLCTRAASIRDGDICSTSPKGNSLEHLVTTDQCDDKSYRLGVLEDHKGTLDSIWYKATEMCQSSRLKAFLRKQGKLSSVCISQGHAVAELEFHHRDYVSRAEKSWKLIASSLQFVLGCNLELRINYVPSCTSDSMYAKLKRSSFNFFGCSRRIGWKSLSSNEQGSESDYAEYTSQKPIMKDQTLTCSSEYEPRVPPFESCHGIGMQVITTLRSSEGNLLSSGKMFLNRPDQETPRISCSRVDSCTEDGCNCEHLASSTLDLDNQSDCFPGTRWLHKKFGSSYAPQRKDFVLSIPKFKCSEICRYDLEPYVFSHRSNNCARAAEEKV* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01191 976 CDD HLD_clamp_pol_III_gamma_tau 464 527 IPR045085 -
Lapu3g01191 976 FunFam Protein STICHEL-like 1 isoform C 528 641 - -
Lapu3g01191 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 513 IPR027417 -
Lapu3g01191 976 Gene3D - 284 462 IPR027417 -
Lapu3g01191 976 SMART AAA_5 323 483 IPR003593 GO:0016887
Lapu3g01191 976 Pfam DNA polymerase III, delta subunit 307 464 - -
Lapu3g01191 976 FunFam DNA polymerase III subunit gamma/tau 465 527 - -
Lapu3g01191 976 SUPERFAMILY post-AAA+ oligomerization domain-like 534 635 IPR008921 GO:0003677|GO:0006260
Lapu3g01191 976 NCBIfam DNA polymerase III subunit gamma/tau 291 637 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lapu3g01191 976 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 294 712 - -
Lapu3g01191 976 Gene3D - 465 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01191 Lapu-Chr3 12848096 12852841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01191 283 589 Core DNA Replication Machinery Family AT1G21690 23.701 6.69e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01191 - - gmx:100812040 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01191 3 12848096 12852841 Lapu3g01191 3 12848096 12852841 ECH
Lapu3g01191 3 12848096 12852841 Lapu9g00840 9 12407308 12412382 PCT