Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01190 ATGGCCACCACCTCTCTCCTCTTCCTCCTCTTCTCTCTCCTCGCCCCCTCCCTCATTTCTTCTTCCCCGCTCCACCACCCTCACTTGGTCGCCCAGGAGGTTAACAGGAAAATCAATGCCTCTGTGGCTAGGAGGAATTTGGGTTACCTGTCATGTGGGACAGGTAACCCAATTGATGACTGCTGGAGGTGTGACCCCAACTGGGAGAAGAACAGGCAAAGACTAGCGGATTGTGCAATCGGGTTTGGGAAAAACGCCATTGGAGGAAAGAACGGAAAAATCTACGTGGTCACGGATTCCGGCGACGATGACGCAGTGACACCTAAGCCAGGGACTCTCCGTTACGCTGTGATTCAAGAGGAGCCTCTTTGGATCATATTCGCCAGGGACATGGTGATTAAGCTGAAGGAGGAGCTGATCATGAACTCCTTCAAGACCATTGATGGAAGAGGCGCTAGCGTGCACATTGCGGGTGGTCCATGCATTACGATACAGTATGTGACCAATGTTATAATCCACGGGATAAACATTCATGACTGTAAGCAAGGGGGGAATGCTATGGTCCGGGACTCCCCACACCACTACGGCTGGAGGACCGTATCTGACGGTGATGGCGTCTCCATCTTCGGAGGAAGCCACGTATGGGTTGACCATTGCTCCTTGTCTAACTGCCATGATGGGTTGATCGATGCCATTCATGGCTCTACCGCCATTACCATCTCCAACAATTACATGACTCACCACGATAAAGTCATGCTTTTGGGTCACAGCGACTCCTACACTCAAGACAAGAACATGCAGGTCACAATTGCTTTCAACCACTTTGGGGAAGGTCTCGTTCAAAGAATGCCAAGGTGTAGGCATGGATACTTTCATGTGGTGAACAATGACTACACCCACTGGGAAATGTATGCCATTGGAGGAAGCGCTGACCCAACCATCAATAGTCAAGGCAACAGGTTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAAAGGGTGGAATTGGAGGTCTGAAGGGGACCTACTGGTAAACGGTGCGTTTTTCACAGCATCAGGGGCAGGAGCCTCCTCTAGCTATGCAAGAGCTTCTAGCTTGAGTGCGAGGCCATCTTCACTGGTGGGGTCCATTACGACTAATGCAGGTGCACTCAACTGCAGAAAAGGTTCCCGCTGCTGA 1215 0.5103 MATTSLLFLLFSLLAPSLISSSPLHHPHLVAQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDAVTPKPGTLRYAVIQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPHHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTNAGALNCRKGSRC* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01190 404 Gene3D - 55 397 IPR012334 -
Lapu3g01190 404 PANTHER PECTATE LYASE 18-RELATED 27 402 IPR045032 GO:0030570
Lapu3g01190 404 FunFam Pectate lyase 55 397 - -
Lapu3g01190 404 SUPERFAMILY Pectin lyase-like 35 399 IPR011050 -
Lapu3g01190 404 SMART amb_all 130 327 IPR002022 -
Lapu3g01190 404 Pfam Pectate lyase 137 321 IPR002022 -
Lapu3g01190 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Lapu3g01190 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Lapu3g01190 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Lapu3g01190 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Lapu3g01190 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Lapu3g01190 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Lapu3g01190 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Lapu3g01190 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01190 Lapu-Chr3 12826006 12827734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01190 7 404 Polysaccharide Lyase AT5G63180 80.000 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01190 K01728 - gmx:100101868 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01190 3 12826006 12827734 Lapu9g00841 9 12525161 12527754 ECH
Lapu9g00841 9 12525161 12527754 Lapu3g01190 3 12826006 12827734 ECH
Lapu3g01190 3 12826006 12827734 Lapu3g01190 3 12826006 12827734 ECH
Lapu3g01190 3 12826006 12827734 Lapu9g00841 9 12525161 12527754 PCT