Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01183 ATGTCTCTGCCTTTCTCTCTCACTACCACGCCTTCCTTCAACTCCCTAACAATGGCGGAATCCTGCATTCTCTCTCTCCCTTCTCTCTTCCGCGCCAGAAACAAAACCCTTTCTCTCTCAATTCCCTCCAAGCCCCTCAGCCTCCAGCTTCCATGCTCCAATTCTTCGCTCTTTCCCCTCACCACCAACACCGCCCGCCTCCCCTCTCTCCTCACATTCGTCGCCCAGACATCGGATTGGGCCCAAGAAGAGGAGGATAACGCCGTATGGGAGAACGAAGCGGACGCCGTGTGGGGAACTGAAGAAGGTGGCGATGACGGCGAGGAAGAAGTGACCGGAGGGGGTTTCGCTGAACCACCCGAGGAAGTTAAGATCTTTGTTGGGAACTTGCCTTATGATATTGGTAGCGAGCAATTGGCTTCGCTTTTTAAGGAGGCTGGCACCGTTGAGGTTGCTGAGGTCATTTATAATAGGGTCACTGACCGTAGTCGTGGCTTTGGATTTGTCACCATGAGTACGCTTGAAGAGGTTGAAAAGGCTGTCGAGAAGTTCAGTGGTTATGAACTAAATGGGAGAGTGTTGACTGTTAATAAGGCCGCCCCAAAAGGAGCACAGCCTGACCGCTCATCACGCCCACCACGAACCTTTAGTTCTTCTTTAAGAATCTATGTTGGCAACTTGCCATGGGATGTTGACGGTACTCGGCTGGAGCAACTTTTTAGTGAACATGGTAAGGTTGTGGAGGCTCGGGTGGTCTATGACAGAGAGAGTGGTCGATCACGTGGTTTTGGCTTTGTCACAATGTCCAGTGAGACTGATGTGAATGATGCAATTGCTGCTCTTGATGGTCAGGACTTGGATGGGAGACCAATCAGAGTGAATGTTGCTGAGGAAAGGCCTAGACGCAGCTCCTTTTGA 918 0.512 MSLPFSLTTTPSFNSLTMAESCILSLPSLFRARNKTLSLSIPSKPLSLQLPCSNSSLFPLTTNTARLPSLLTFVAQTSDWAQEEEDNAVWENEADAVWGTEEGGDDGEEEVTGGGFAEPPEEVKIFVGNLPYDIGSEQLASLFKEAGTVEVAEVIYNRVTDRSRGFGFVTMSTLEEVEKAVEKFSGYELNGRVLTVNKAAPKGAQPDRSSRPPRTFSSSLRIYVGNLPWDVDGTRLEQLFSEHGKVVEARVVYDRESGRSRGFGFVTMSSETDVNDAIAALDGQDLDGRPIRVNVAEERPRRSSF* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01183 305 SMART rrm1_1 124 197 IPR000504 GO:0003723
Lapu3g01183 305 SMART rrm1_1 221 294 IPR000504 GO:0003723
Lapu3g01183 305 Gene3D - 75 207 IPR012677 -
Lapu3g01183 305 Gene3D - 208 304 IPR012677 -
Lapu3g01183 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Lapu3g01183 305 FunFam 31 kDa ribonucleoprotein, chloroplastic 210 304 - -
Lapu3g01183 305 SUPERFAMILY RNA-binding domain, RBD 213 303 IPR035979 GO:0003676
Lapu3g01183 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Lapu3g01183 305 CDD RRM2_NsCP33_like 221 296 - -
Lapu3g01183 305 PANTHER OS02G0815200 PROTEIN 44 301 - -
Lapu3g01183 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 292 IPR000504 GO:0003723
Lapu3g01183 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 194 IPR000504 GO:0003723
Lapu3g01183 305 SUPERFAMILY RNA-binding domain, RBD 119 214 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01183 Lapu-Chr3 12760520 12763244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01183 125 302 Eukaryotic Initiation Factors Gene Family AT3G16380 35.294 1.93e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01183 - - gmx:100811487 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01183 3 12760520 12763244 Lapu3g01183 3 12760520 12763244 ECH