Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01167 ATGGCAATTTCTTCGGCGGCTGCAGCGGCAGCAACCTCAAAGCTCCCTTACCCTCATATCTATCCATCTCCTTCACCCTCCTCCAATGCCCTCTTCCTCAAAACTCACACACCCTCCACCACCCACCTTTCCTCGTCCTTCATCCACCCCTCCACGGTCCTCCACCTCGCCCCCACCCCCGCTGCCCTTCGCCGCCGCTCCTTCACCGTCCGCGCTGCCCGCGGAAAATTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACTATCGGTCACGTCGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAACAGCGCCCCCAAGAAATACGACGAAATCGACGCTGCCCCCGAGGAGCGCGCCCGAGGCATCACCATCAACACTGCCACCGTCGAGTACGAGACCGAGAACCGTCACTACGCCCACGTCGACTGCCCTGGACACGCCGACTACGTCAAGAACATGATCACCGGCGCTGCCCAGATGGACGGAGCCATCCTCGTGGTTTCCGGCGCCGACGGCCCAATGCCACAGACCAAAGAACACATCCTTTTGGCCAAGCAAGTCGGTGTCCCCAACATTGTGGTCTTCCTCAACAAACAAGACCAGGTTGATGACGAGGAGCTTCTGCAGTTGGTAGAATTGGAGGTTCGCGAGCTTCTTTCTTCGTACGAGTTCCCTGGTGATGATGTTCCAATTGTTTCTGGCTCTGCGTTGCTGGCTTTGGAAGCTCTGATGGCCAACCCTTCCATCAAGCGCGGCGAAAATCAATGGGTTGATAAGATTTACGAGCTTATGGAAGCTGTGGATAACTACATTCCCATCCCTCAGCGCCAAACTGAACTTCCCTTTTTGTTGGCCATTGAGGATGTGTTTACTATCACTGGACGTGGAACCGTGGCCACTGGCCGTGTTGAGAGGGGTACCATTAAGGTTGGAGAGACGGTTGATATTGTCGGTGTGAGGGAAACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTCTGGACGAGGCTTTGGCTGGGGACAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGACTGATATTCAGAGAGGGATGGTTTTGTCTAAGCCTGGAACCATTACCCCTCACACCAAGTTTTCTGCAATTGTGTATGTCTTGAAGAAGGAAGAGGGTGGCAGGCACTCTCCCTTCTTCGCCGGTTACAGGCCACAGTTCTACATGAGGACCACTGATGTTACTGGCAAAGTAACTTCCATTATGAATGACAAGGATGAGGAGTCCAAGATGGTGATGCCCGGTGACCGTGTTAAGATGGTGGTTGAACTTATTGTCCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCTATCATTGAGTAA 1443 0.5392 MAISSAAAAAATSKLPYPHIYPSPSPSSNALFLKTHTPSTTHLSSSFIHPSTVLHLAPTPAALRRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIVSGSALLALEALMANPSIKRGENQWVDKIYELMEAVDNYIPIPQRQTELPFLLAIEDVFTITGRGTVATGRVERGTIKVGETVDIVGVRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLSKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01167 480 Hamap Elongation factor Tu [tuf]. 72 480 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lapu3g01167 480 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 81 285 IPR000795 GO:0003924|GO:0005525
Lapu3g01167 480 NCBIfam small GTP-binding protein domain 84 216 IPR005225 GO:0005525
Lapu3g01167 480 Gene3D - 73 284 IPR027417 -
Lapu3g01167 480 FunFam Elongation factor Tu 419 479 - -
Lapu3g01167 480 PRINTS GTP-binding elongation factor signature 85 98 IPR000795 GO:0003924|GO:0005525
Lapu3g01167 480 PRINTS GTP-binding elongation factor signature 149 159 IPR000795 GO:0003924|GO:0005525
Lapu3g01167 480 PRINTS GTP-binding elongation factor signature 129 137 IPR000795 GO:0003924|GO:0005525
Lapu3g01167 480 PRINTS GTP-binding elongation factor signature 202 211 IPR000795 GO:0003924|GO:0005525
Lapu3g01167 480 PRINTS GTP-binding elongation factor signature 165 176 IPR000795 GO:0003924|GO:0005525
Lapu3g01167 480 FunFam Elongation factor Tu 287 415 - -
Lapu3g01167 480 Gene3D Translation factors 419 479 - -
Lapu3g01167 480 Pfam Elongation factor Tu GTP binding domain 81 282 IPR000795 GO:0003924|GO:0005525
Lapu3g01167 480 NCBIfam elongation factor Tu 73 480 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lapu3g01167 480 CDD EFTU_II 292 378 IPR033720 -
Lapu3g01167 480 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 122 137 IPR031157 -
Lapu3g01167 480 CDD EFTU_III 381 475 - -
Lapu3g01167 480 PANTHER ELONGATION FACTOR TU-RELATED 69 479 - -
Lapu3g01167 480 Pfam Elongation factor Tu domain 2 306 374 IPR004161 GO:0005525
Lapu3g01167 480 Pfam Elongation factor Tu C-terminal domain 379 478 IPR004160 -
Lapu3g01167 480 FunFam Elongation factor Tu 72 284 - -
Lapu3g01167 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 307 IPR027417 -
Lapu3g01167 480 Gene3D Translation factors 287 415 - -
Lapu3g01167 480 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 379 479 IPR009001 -
Lapu3g01167 480 CDD EF_Tu 82 284 IPR041709 -
Lapu3g01167 480 SUPERFAMILY Translation proteins 286 382 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01167 Lapu-Chr3 12607801 12609626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01167 79 478 Eukaryotic Initiation Factors Gene Family AT5G60390 30.562 9.91e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01167 K02358 - gmx:100791320 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01167 3 12607801 12609626 Lapu3g01167 3 12607801 12609626 ECH