LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g01156	ATGAATCCCTACGACAATAGATACTCCGATCCTGCTTCTTTTCACGCTCGTCGCAGTGATTACGTTAGATCTATTCCTCCGCCCTCTTTAGGCGGTCGCGGCGACGCGGTTCCCTACGGCGTATTTAGACCCAACGGGTTCCGATCCGCACCCGTTGCTCCGATTCCACCATTTGTGCCGCCTCCTGGGGGGTTTAACGTAGGACGAGGTAGTGGTAGAGTGGGCAATGGTCACCTGAGTGATAGAAAACACGACATAGGTCGAAGCGGGGGTGGAATAGGTCGTGGCGGTGGCGGTGGTAGAGGCGGGGCTCACGGTTTTAGGGGTTCCAGGAGAGGAGGTAGACACGATGGTGGATCTTCTAGGGACGATTTGAACAACATTACACTTCCGAAGCAGAGTTTTAAGAATTTGGTTCCTTTTGAGAAGAATTTTTACGTTGAATCCCCTGCTGTGAGAGCCATGTCTGAGCAAGAAGTTATGCATTACCGTGCTTGTAGAGAGATCACCGTGCAAGGGCATGATGTGCCGAAACCTGTGCGGATGTTTCACGAGGCAAATTTTCCTGATTACTGCCTTGAGGTCATTGCCAATCTGGGTTTTGCTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCAATGAAGGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCTGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCTCAGCCTCGATTGGCGCATGGTGATGGTCCCATCGTTTTAGTGTTAGCACCGACAAGAGAGCTAGCTATTCAAATTCAAGAAGAGGCTCTCAAATTTGGGTCTCGAACAAATAGTAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGCCCTCAAATTCGTGAGCTTAGAAGAGGTGTTGAGATTGTTATTGCAACACCTGGTCGCCTAATAGATATGTTGGAAGCTCAGCACACAAACCTTCAAAGAGTGACTTACCTTGTCTTGGACGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGGCCAGATTCGACCAGATAGGCAAACATTGTTATGGAGTGCTACATGGCCAAGGGATGTTGAAACTCTGGCAAAGCAGTTTCTGCGCAATCCATACAAGGTAATTATCGGGTCACCAAACCTGAAGGCAAATCAATCTATAAATCAGGTTGTTGAAGTTGTAACAGACATGGACAAATATAATAGATTAATCAGACTGCTAAAAGAAGTGATGGACGGGAGCCGAATTCTAATATTCATGGAGACAAAAAAAGGATGTGATCAAGTTACGAGACAAATGAGAATGGATGGGTGGCCAGCACTATCCATCCATGGTGATAAAAACCAAGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGGTAGGATCACTTGGGTTAATGCATGGTGGTTTACATGCTTGGCTGAGGAAGATGTAAAAGACATCAAGTGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGTGCGGGGGCTAAAGGAACTGCATACACATTTTTTACACATGCCAATGCCAAGTATGCAAGGGATCTGATCAAGATTTTACAAGATGCTGGCCAGGTTGTGAGTCCTGCATTGTCTGCATTGGTTCGGTCAGCTGGATCTGGTCAATTTGGATCAGGGGGAAGTTTTCGCACACGAGGGCGCGGAGGCTTTGGAAATCGAGGTTTAACATCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCTTGGCAGTGTCTATAG	1869	0.4714	MNPYDNRYSDPASFHARRSDYVRSIPPPSLGGRGDAVPYGVFRPNGFRSAPVAPIPPFVPPPGGFNVGRGSGRVGNGHLSDRKHDIGRSGGGIGRGGGGGRGGAHGFRGSRRGGRHDGGSSRDDLNNITLPKQSFKNLVPFEKNFYVESPAVRAMSEQEVMHYRACREITVQGHDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAIQIQEEALKFGSRTNSRSTCIYGGAPKGPQIRELRRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLLWSATWPRDVETLAKQFLRNPYKVIIGSPNLKANQSINQVVEVVTDMDKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLGRITWVNAWWFTCLAEEDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKYARDLIKILQDAGQVVSPALSALVRSAGSGQFGSGGSFRTRGRGGFGNRGLTSGSNAIPLGSKRPWQCL*	623

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g01156	622	CDD	SF2_C_DEAD	400	547	-	-
	Lapu3g01156	622	Pfam	Helicase conserved C-terminal domain	411	538	IPR001650	-
	Lapu3g01156	622	SMART	ultradead3	200	403	IPR014001	-
	Lapu3g01156	622	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	415	577	IPR001650	-
	Lapu3g01156	622	Gene3D	-	389	580	IPR027417	-
	Lapu3g01156	622	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	181	209	IPR014014	GO:0003724
	Lapu3g01156	622	Pfam	DEAD/DEAH box helicase	205	376	IPR011545	GO:0003676\|GO:0005524
	Lapu3g01156	622	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	167	389	IPR027417	-
	Lapu3g01156	622	MobiDBLite	consensus disorder prediction	583	604	-	-
	Lapu3g01156	622	MobiDBLite	consensus disorder prediction	70	128	-	-
	Lapu3g01156	622	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	155	576	-	-
	Lapu3g01156	622	FunFam	probable ATP-dependent RNA helicase DDX17	143	390	-	-
	Lapu3g01156	622	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	325	574	IPR027417	-
	Lapu3g01156	622	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	333	341	IPR000629	-
	Lapu3g01156	622	CDD	DEADc_DDX5_DDX17	193	387	-	-
	Lapu3g01156	622	SMART	helicmild6	440	538	IPR001650	-
	Lapu3g01156	622	Gene3D	-	144	388	IPR027417	-
	Lapu3g01156	622	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	212	387	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g01156	Lapu-Chr3	12504187	12512627	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g01156	178	558	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.808	2.39e-63	213

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g01156	K12823		-	gmx:100777610	958.362