Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01153 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAATTGAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTCTTCAACTACATAACCAGATTCGGTGTTGGATGCTGGAGTTCGGTTCCAAAACTAGCCGGACTGCAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGGCCTGATTTAAAGAGAGGGATGTTCTCACAGCAGGAGGAGGATCTTATAATCAGTCTCCATGAAGTTCTCGGAAACAGAGAGATTTTCTTGAACAAGGCAGCATTGGACCCTTTATCATACTATGATTTTCCAATGGGTCCTGCGCAGTCTGGTTTTAACTTACCTATGAGTCAGTATCAGACAAGCCTTAAAGCATCTGATCAGAGTTCTTTTGGACCCAATTCAAGCTACGGATTCCTTTCAATGCCAAGTCTAACCAATTCTGATCATGGGAACTTGTCGGTGACTGAGTTTTCAGACAACAATTCAGCTTCCAAAATCAGTTCTTTGCTCATGAATGACCAGGTGAAAGAAAGTTCCAGCAATAGCTCAAACATGAGCACCATTTACGCTGGAGGGTGTCATATCAGCAGCATAATGGAAAATGCAGGTTTTTCTTGGGAGGGTGAGAACAAATTTGATCCTTTGTTTCAGTTCCAAGTAAATGCCACAAAGTCCGAGGATTTCAAGACAAGTCCATGGGAAGAAGGGCAGTTGCAGACTCACAATTCGATAGATTTCACTAGCTTTCCATTAACGTCACTTTCAGAAGATCTAACTGGAGAAAATTTTGATGTATTTCAGCATATATGA 819 0.4164 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNREIFLNKAALDPLSYYDFPMGPAQSGFNLPMSQYQTSLKASDQSSFGPNSSYGFLSMPSLTNSDHGNLSVTEFSDNNSASKISSLLMNDQVKESSSNSSNMSTIYAGGCHISSIMENAGFSWEGENKFDPLFQFQVNATKSEDFKTSPWEEGQLQTHNSIDFTSFPLTSLSEDLTGENFDVFQHI* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01153 272 FunFam MYB transcription factor 11 67 - -
Lapu3g01153 272 PANTHER MYB DOMAIN PROTEIN 55 1 88 - -
Lapu3g01153 272 SUPERFAMILY Homeodomain-like 16 88 IPR009057 -
Lapu3g01153 272 SMART sant 13 63 IPR001005 -
Lapu3g01153 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lapu3g01153 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu3g01153 272 CDD SANT 17 61 IPR001005 -
Lapu3g01153 272 Gene3D - 11 67 - -
Lapu3g01153 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01153 Lapu-Chr3 12469740 12471068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01153 1 88 MYB Transcription Factor Family AT4G01680 86.364 5.09e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu3g01153 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01153 K09422 - gmx:100811140 332.413