Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01150 ATGGCATCCTCCAGCTCTTACAATTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCGCCTTACTTCCCACCCGAAGAGCCTCAAAAATTCGCAAACGTCCACAAAATTTTTGGTGCCAGCAATGTGACCAAACTCCTCAACGAACTCCTCCCTCAGCAGAGGGAGGATGCAGTGAACTCACTCGCTTATGAAGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGCGTAGGAGCCATCTCTTTCCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTACTCTTACACTGACATCCCTCCAGCATCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCAACATGTGCCTCAAAGGCAGTTTACTGCAAGATTTGGTAACGAAGGAACTGGGTTTTATCGGCAATCTACTGCTACTGCTTATTCCTTTCCTTATGCCCTTCCTTGGACTGATACCTCTTCGGAGGACATCAGTGAGGGAGGAGTGGGAGGAGGTAATTTGTGA 561 0.492 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDIPPASLSVPPGLASFQHVPQRQFTARFGNEGTGFYRQSTATAYSFPYALPWTDTSSEDISEGGVGGGNL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01150 186 Coils Coil 89 109 - -
Lapu3g01150 186 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lapu3g01150 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 133 - -
Lapu3g01150 186 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01150 Lapu-Chr3 12407799 12408359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01150 1 186 AS2 family AT5G63090 62.176 8.53e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu3g01150 LOB 3.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01150 - - gmx:100775922 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01150 3 12407799 12408359 Lapu3g01150 3 12407799 12408359 ECH