LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g01135	ATGTTGCTGTCGTCGTCTTTGTTAATTCCACGTGCGGGTTGCTCCGGTGCGGGCATACGCGAAACGGGTCTCACGTGCGGCGGTTCTGAGAACCCTGGATCTAGCGCGTCCAAGTTCATGGCCATAATGGACACGGTGTCGTTTCAGGTGAAAGATCGCGGGTATGGAGCGCAAACGCTGCTGGGTTATGGGCCTCCGATGTACGCATTGGGCCAATGCCGGCGCGACGTAAAGCCCACGGACTGCTACACGTGTTTCAGCCAAGCGAGGCAGGTGCTGTCACGGTGCGTGCCCAAGACAGCTGGCAGAATCTACCTCGACGGCTGCTTCCTCCGATACGACAACTACTCCTTCATCCGCGAGAGCGTGGACCCCACTCGTGACATCAGCATCTGCATGACCCCGACAATGGGGAATGACGGGGGCAGACGGGTGGCGGCAATGGTATCGAACGTGACAAAGGAGGCGGTGGAGCGTGGGTTCGCGGTGGGCGGAGGGGAAGGGGTTTTCGCCCTGGCGCAGTGCTGGTCGACGCTGAACAAAGGGAGGTGCGAGATATGCTTGAGTGAAGCGGCGAAGAAAGTGCAGGAATGTGTGCCGAATGCTGAGGGTAAGAGTCTATTCACTGGTTGTATAGTGAGGTATTCAACGCGCAAATTCTACAACGACATTGCACCATCTAACATCAAGGTTTCTACAGAAGGGCCTGGCATCTGGATGATCGTGGCATGTGTATTATCAGCGATCTTAGCAATCTTACTCGTCGTCCTTGCTGTATGTCTATGCTGCCAAAGAACATTGTCACGCAGAAAAGTAAGCGACAGTGGTGGTGCGCCACCTGATTTTTCTTTCGTAGCTGGATTCAGTTTTAGATACGATTTGCTCGAGAAGGCCACAAATCATTTTGATCCCGCAAACAAATTAGGTCAAGGTGGAGCTGCTTCCGTGTTCAAAGGAACCCTCCCCTCAGGGGGGACCGTTGCTGTCAAACGATTGCTTTTTAATAAACAGCAATGGACAGAGGGGCTCTTCAGTGAGATCAATTTGATTAATGGGATTCAACACAAGAATGTGGTGAAGCTTTTGGGGTGCAGCATTGAAGGCCCTGAAAGCCTGTTGGTTTATGAATTTGTGCCCAATGGAAGTCTTGATCAGGTCCTTTTCGGTAAGGACTCGGAAGATGCTCTGAACTGGGAACAACGGTTTCAAATCATATGTGGGATAGCTGAGGGCCTAGCATACCTTCATGAAGGCTCTGGAACCAAGATTATTCACAGAGACATAAAGTCCAGCAACATTCTATTTGATGAGAATCTGAATCCAAAAATAGCGGATTTTGGTCTTGCTCGGAGTGTTATTGAAAATAAATCTCATCTCAGGACAGGAAATTCGAGGACACTGGGATATATGGCTCCTGAATATGTTTCCAAAGGACAATTGACAGAGAAGGCAGATATCTATGCTTTTGGTGTGCTAATTGTTGAAATTGTCTGTGGTAAGAAGAACAGTGATTACATATCGGGGTCAACTTCACTACTCCACAGCGTCTGGAAGAATTACAAGACAAATAACATAACTGCATCCGTTGATCCTGCTCTGCACGGTAAACTTACAGTAGAAAAAGCATCAAATACGCTCCAAGTTGGCCTTCTTTGTACACAATCAACTGTTACTGTCAGACCATCCATGTCTGAAGTAGTTCAGATGCTAACCAAGAAAGGCTACGCTATTCCCTCCCCAAAGCAACAACCATTCCTTAATTTCAGTGGGCTAAGTCAAAATGACCGCACTCTATCCTCAAATGGGCATGCAAGTGCAAGGTCCTCCTTCCACAGCACCACCAGTTCCCTAATTCCGAATGATGATTTAACGGTACACGAGAATTCCTTTTCTCATGACGACAGGTTCACTGCTATGAGCCCTGATTCCAATATCCAAATAAATATGCGGGCACCTGAACCTAGGTAG	1968	0.4858	MLLSSSLLIPRAGCSGAGIRETGLTCGGSENPGSSASKFMAIMDTVSFQVKDRGYGAQTLLGYGPPMYALGQCRRDVKPTDCYTCFSQARQVLSRCVPKTAGRIYLDGCFLRYDNYSFIRESVDPTRDISICMTPTMGNDGGRRVAAMVSNVTKEAVERGFAVGGGEGVFALAQCWSTLNKGRCEICLSEAAKKVQECVPNAEGKSLFTGCIVRYSTRKFYNDIAPSNIKVSTEGPGIWMIVACVLSAILAILLVVLAVCLCCQRTLSRRKVSDSGGAPPDFSFVAGFSFRYDLLEKATNHFDPANKLGQGGAASVFKGTLPSGGTVAVKRLLFNKQQWTEGLFSEINLINGIQHKNVVKLLGCSIEGPESLLVYEFVPNGSLDQVLFGKDSEDALNWEQRFQIICGIAEGLAYLHEGSGTKIIHRDIKSSNILFDENLNPKIADFGLARSVIENKSHLRTGNSRTLGYMAPEYVSKGQLTEKADIYAFGVLIVEIVCGKKNSDYISGSTSLLHSVWKNYKTNNITASVDPALHGKLTVEKASNTLQVGLLCTQSTVTVRPSMSEVVQMLTKKGYAIPSPKQQPFLNFSGLSQNDRTLSSNGHASARSSFHSTTSSLIPNDDLTVHENSFSHDDRFTAMSPDSNIQINMRAPEPR*	656

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g01135	655	ProSiteProfiles	Gnk2-homologous domain profile.	123	220	IPR002902	-
	Lapu3g01135	655	FunFam	Cysteine-rich receptor-like protein kinase 2	378	577	-	-
	Lapu3g01135	655	Pfam	Protein kinase domain	305	568	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g01135	655	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	67	605	-	-
	Lapu3g01135	655	ProSiteProfiles	Protein kinase domain profile.	302	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g01135	655	SMART	serkin_6	302	570	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g01135	655	CDD	STKc_IRAK	308	572	-	-
	Lapu3g01135	655	Pfam	Salt stress response/antifungal	55	116	IPR002902	-
	Lapu3g01135	655	Pfam	Salt stress response/antifungal	149	217	IPR002902	-
	Lapu3g01135	655	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	423	435	IPR008271	GO:0004672\|GO:0006468
	Lapu3g01135	655	Gene3D	-	138	220	IPR038408	-
	Lapu3g01135	655	Gene3D	-	28	118	IPR038408	-
	Lapu3g01135	655	MobiDBLite	consensus disorder prediction	596	625	-	-
	Lapu3g01135	655	SUPERFAMILY	Protein kinase-like (PK-like)	289	587	IPR011009	-
	Lapu3g01135	655	Gene3D	Phosphorylase Kinase; domain 1	281	377	-	-
	Lapu3g01135	655	MobiDBLite	consensus disorder prediction	596	655	-	-
	Lapu3g01135	655	ProSiteProfiles	Gnk2-homologous domain profile.	21	118	IPR002902	-
	Lapu3g01135	655	Gene3D	Transferase(Phosphotransferase) domain 1	378	578	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g01135	Lapu-Chr3	12223174	12226576	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g01135	1	616	Receptor kinase-like Gene Family	AT1G70520	41.085	2.23e-146	438

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lapu3g01135		Pkinase	2.9e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g01135	-		-	gmx:100780384	945.651