Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01128 ATGCATGTGCAAGAAAACTGCTTGAAACCCAGCATGGGGGATCAGCTTCCTTTTGGAGCTCCTTCCTCACAGGGTTTCTTCCAAGATTTTCATCATATTGACCAGTTTCCTGTGGATAATGGCTCATCATCCAATCCCGCTTTCGGGGTACATACTTCAAATTTTGATCCCTTTGATCATAATGTAAACTGTGAGTCTGCACCTCCTGATTTTGAAGTTTTTGAGTGCAAGCCTTTTGCCGAGAGTAATGGTAGTGCACATGCTCATCTGATGGACAATTTCCAATATGTAGGTTATAGTTTGAACCTTCCACGGACGAATCAACTGGATATTGTGGTGGCAAACCAAAGATATCTGCCATTCGATGCTCTAGAAACCAAACCTTTGAATTTTGTTGTACCAGATCAAGTCATATCCCCACCAAATTATTATAAGAGAGTTGGTTCGAATAAAAACCTCAGGGAATCTCCAAGCACTAGGCGAACATTCAAAGCTCGGAAGAAATCCAACATAGTGAAGGGCCAATGGACATCAGAGGAAGACAGATTGTTGATTCAACTGGTCGACCAATATGGAGTGAGGAAGTGGTCACACATAGCTCAGGCGTTGCCTGGGAGAATAGGGAAACAATGCAGAGAACGATGGCATAACCATTTAAGACCAGACATTAAGAAGGACATATGGACTGAAGAAGAGGATACGATACTGATCCAAGCTCATGCAGAGATAGGAAACAAGTGGGCAGAGATTGCAAAAAAATTGCCTGGAAGAACTGAGAACTCCATCAAAAACCATTGGAACGCAACAAAGAGAAGACAATATTCCAAAAGAAAATGTCGTTCCAAGTACCCCCGAGGCTCTCTTCTTCAGGAATATATCAAGAGCTTGAACTTAGACCAAAATCCACCAATGGACTATCGAAAAAAATCTGCTAAAAATGCCAATGGCAAGACAAACAATAACGGAAAAGCAGCAGCTCAGCTCCTGTGTGCTGATCAATTCTGTCCCAATGCCCAGTTGGTGCCAAAGTATGATTTTAATGAGGTCCCAGATTTTTGTTTGGATGATAACTTGTTTGAAGAGGGGTGCAGCATTGATTCTCTGCTGGATGATATACAAAGTGCTTCTACTATGGATGAGAAAGATTTTGATGGAAAAGTGCAAGGTGCTCCTACTATGGAGGGAAAGCAATCTCATCAAGGAGGCATCATGCAGCGTGTTCATACTGATGAGCATCATGAGACTGAGATGATGGCACCAACTATGGGAATTGAAGTTAAGAAGGAGATGGATTTGGTGGAGATGATATCACACCACGTTAATGAAAGTATTGGTATATAA 1341 0.4191 MHVQENCLKPSMGDQLPFGAPSSQGFFQDFHHIDQFPVDNGSSSNPAFGVHTSNFDPFDHNVNCESAPPDFEVFECKPFAESNGSAHAHLMDNFQYVGYSLNLPRTNQLDIVVANQRYLPFDALETKPLNFVVPDQVISPPNYYKRVGSNKNLRESPSTRRTFKARKKSNIVKGQWTSEEDRLLIQLVDQYGVRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDIWTEEEDTILIQAHAEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDQNPPMDYRKKSAKNANGKTNNNGKAAAQLLCADQFCPNAQLVPKYDFNEVPDFCLDDNLFEEGCSIDSLLDDIQSASTMDEKDFDGKVQGAPTMEGKQSHQGGIMQRVHTDEHHETEMMAPTMGIEVKKEMDLVEMISHHVNESIGI* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01128 446 Pfam Myb-like DNA-binding domain 228 267 IPR001005 -
Lapu3g01128 446 Pfam Myb-like DNA-binding domain 173 219 IPR001005 -
Lapu3g01128 446 Gene3D - 172 225 - -
Lapu3g01128 446 Gene3D - 227 287 - -
Lapu3g01128 446 CDD SANT 228 270 IPR001005 -
Lapu3g01128 446 PANTHER MYB PROTEIN-RELATED 156 314 - -
Lapu3g01128 446 SMART sant 224 272 IPR001005 -
Lapu3g01128 446 SMART sant 172 221 IPR001005 -
Lapu3g01128 446 CDD SANT 176 219 IPR001005 -
Lapu3g01128 446 ProSiteProfiles Myb-like domain profile. 168 219 IPR001005 -
Lapu3g01128 446 FunFam Transcription factor MYB119 226 290 - -
Lapu3g01128 446 SUPERFAMILY Homeodomain-like 170 266 IPR009057 -
Lapu3g01128 446 FunFam Transcriptional activator Myb isoform A 172 225 - -
Lapu3g01128 446 ProSiteProfiles Myb-like domain profile. 220 270 IPR001005 -
Lapu3g01128 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 223 IPR017930 -
Lapu3g01128 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 274 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01128 Lapu-Chr3 12170884 12172557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01128 117 389 MYB Transcription Factor Family AT4G18770 54.452 8.29e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g01128 Myb_DNA-binding 5.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01128 K09422 - gmx:100816653 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01128 3 12170884 12172557 Lapu3g01128 3 12170884 12172557 ECH