Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01116 ATGGAAGCTTACGAGAACGAATCTAAGAAGGGGTTCTGGAATGCGGAGGAAGACTCGGTTCTAACTAATTATGTAAAGAAGCATGGAACTGGGAAGTGGAACAGGATTCCTAAAGTGACAGGGTTGAAGAGAAGCGGCAAAAGTTGCAGACTGAGATGGATGAACTATCTAACTCCTGATGTCAAGCGTGGAGATTTCTCAGAAGAAGAAGAAGACCTTGTTGTTCGGCTTCACAGTCTCCTTGGAAATAGGTGGTCTTTGATCGCGGGGAGGATTCCGGGGAGAACAGACAACCAAGTGAAGAACTTTTGGAACACTCATTTAAGCAAGAAGCTTGGAGTTGATAAGAAGAAAAAGAGAAAAGCTTGGGTCACTGCAAAATATATCCCTAGAGTTGAAGCAGAGGGTAATTGCAACAGTGCATCAAAGGGGAAGAGTGGTGAAGGTGAGAAACTTGTCCATAAAAGTTGGAGTGATGATCTAATGGAGTTAGGAAGCATGCACGAGGGGATTATGACAGATGAGTTTGGGTGTAGCTTTTCTTTTGCTGATACCGTGTTTGATCTATGTCCTTACTACACTGAATCTTTTGAAGACTGTTTCTTTGGCCTTTGA 615 0.4309 MEAYENESKKGFWNAEEDSVLTNYVKKHGTGKWNRIPKVTGLKRSGKSCRLRWMNYLTPDVKRGDFSEEEEDLVVRLHSLLGNRWSLIAGRIPGRTDNQVKNFWNTHLSKKLGVDKKKKRKAWVTAKYIPRVEAEGNCNSASKGKSGEGEKLVHKSWSDDLMELGSMHEGIMTDEFGCSFSFADTVFDLCPYYTESFEDCFFGL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01116 204 Gene3D - 65 129 - -
Lapu3g01116 204 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 133 - -
Lapu3g01116 204 Gene3D - 10 62 - -
Lapu3g01116 204 FunFam MYB-related transcription factor 9 62 - -
Lapu3g01116 204 CDD SANT 66 108 IPR001005 -
Lapu3g01116 204 CDD SANT 13 57 IPR001005 -
Lapu3g01116 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 57 IPR017930 -
Lapu3g01116 204 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Lapu3g01116 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Lapu3g01116 204 SMART sant 62 110 IPR001005 -
Lapu3g01116 204 SMART sant 9 59 IPR001005 -
Lapu3g01116 204 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Lapu3g01116 204 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lapu3g01116 204 FunFam Transcription factor WER 64 134 - -
Lapu3g01116 204 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Lapu3g01116 204 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01116 Lapu-Chr3 12047980 12048781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01116 5 147 MYB Transcription Factor Family AT5G40330 60.417 3.30e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g01116 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01116 K09422 - zju:107418407 201.83